Hg_chrom5_TN10mRNA_9388
Organism: Heterodera glycines Gene Locus: chr5:3035797-3038828 Feature type: polypeptideProtein Sequence
Length: 615
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.775 | 0.832 | 0.857 | 0.336 | 0.867 | 1.167 | 0.987 | 2.195 | 1.265 | 1.187 | 0.591 | 1.435 | 2.349 | 1.188 | 1.195 | 1.045 | 0.666 | 0.912 | 1.001 | 0.478 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8828
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-22
|
0.987
|
1.000
|
0.000
|
0.000
|
0.214
|
0.318
|
0.082
|
0.423
|
0.395
|
0.234
|
0.164
|
0.054
|
0.202
|
0.627
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009218
|
1.000
|
1.000
|
Hsc_gene_19846.t1
|
Hsc_gene_16338.t1;Hsc_gene_16355.t1;Hsc_gene_19482.t1;Hsc_gene_19846.t1
|
— |
Q04456.1 Gut esterase 1 [Caenorhabditis briggsae]
|
KAI1702829.1 carboxylesterase family domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.814|GO:0003674_0.798|GO:0005575_0.730|GO:0110165_0.730|GO:0009987_0.695|GO:0003824_0.653|GO:0016020_0.599|GO:0008152_0.585|GO:0016787_0.568|GO:0005622_0.545|GO:0016788_0.541|GO:0043226_0.534|GO:0052689_0.525|GO:0044237_0.517
|
IPR002018+72-586+|IPR019826+257-272+|IPR029058+62-613_72-606+|IPR050309+23-608+
|
— |
PF00135+72-586+Carboxylesterase_family
|
— |
PTHR11559+23-608+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-615
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.781
|
69047.880
|
7.558
|
12.500
|
24.065
|
15.772
|
43.577
|
56.423
|
14.146
|
9.919
|
47.805
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
657.007
|
3544.182
|
743.311
|
315.341
|
111.316
|
119.368
|
264.171
|
482.608
|
139.661
|
677.049
|
446.740
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-2.482
|
-3.627
|
-1.129
|
-1.534
|
— |
1.156
|
1.918
|
-0.731
|
— | — | — | — | — |