Hg_chrom5_TN10mRNA_9389
Organism: Heterodera glycines Gene Locus: chr5:3039824-3044535 Feature type: polypeptideProtein Sequence
Length: 1,018
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.822 | 1.394 | 0.929 | 1.457 | 1.343 | 1.335 | 0.702 | 0.982 | 0.982 | 1.168 | 0.923 | 1.271 | 1.091 | 0.945 | 1.764 | 1.067 | 0.515 | 0.7 | 0.907 | 0.376 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8829
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Not_Clustered
|
0.362
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— |
KRRR,RRRRPHGDDRLHRHRRG,KKRGRNANAETKRVNRR,RKPMEIGDFLMMANSKKRG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.577
|
0.189
|
0.027
|
0.615
|
0.091
|
0.070
|
0.094
|
0.072
|
0.151
|
0.103
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009219
|
1.000
|
1.000
|
Hsc_gene_19847.t1
|
Hsc_gene_19847.t1
|
— |
Q94981.2 E3 ubiquitin-protein ligase ariadne-1 [Drosophila melanogaster]
|
KHN73510.1 E3 ubiquitin-protein ligase ARIH2 [Toxocara canis]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004842|GO:0008270|GO:0016567
|
GO:0008150_0.814|GO:0005575_0.745|GO:0110165_0.744|GO:0005622_0.675|GO:0009987_0.627|GO:0016020_0.593|GO:0008152_0.572|GO:0043170_0.571|GO:0044238_0.571|GO:0043226_0.570|GO:0005737_0.559|GO:0043229_0.550|GO:0065007_0.528|GO:0019538_0.522|GO:0003674_0.520|GO:0050789_0.516|GO:0043227_0.509
|
IPR002867+728-797_812-870+|IPR013083+652-741+|IPR031127+377-869+|IPR044066+651-874+
|
SM00647+728-797_812-870+
|
PF22191+828-870+IBR_domain
|
— |
PTHR11685+377-869+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-64;174-471
|
2.000
|
65-173;472-1018
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.836
|
115298.950
|
8.237
|
26.000
|
29.862
|
8.350
|
51.670
|
48.330
|
16.699
|
13.163
|
48.428
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
4116.526
|
4189.174
|
1454.395
|
1879.592
|
2357.465
|
3337.363
|
3876.706
|
13413.716
|
2394.831
|
4773.024
|
3753.798
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.755
|
-1.293
|
0.478
|
0.296
|
0.516
|
0.225
|
— | — | — | — | — | — | — |
No JSON data available for plots.