Hg_chrom5_TN10mRNA_9391
Organism: Heterodera glycines Gene Locus: chr5:3054878-3058423 Feature type: polypeptideProtein Sequence
Length: 792
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.778 | 1.233 | 1.148 | 0.392 | 1.199 | 0.809 | 0.947 | 0.631 | 1.066 | 0.887 | 1.167 | 1.114 | 0.982 | 0.874 | 1.185 | 1.605 | 0.869 | 0.689 | 0.971 | 1.114 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8831
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
GADGKKKMYRNGRRAK,RRPSNAMDFELFEEKAKEK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.248
|
0.369
|
0.019
|
0.517
|
0.345
|
0.463
|
0.344
|
0.201
|
0.277
|
0.068
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004044
|
1.000
|
2.000
|
Hsc_gene_19853.t1;Hsc_gene_19853.t2
|
Hsc_gene_19853.t1;Hsc_gene_19853.t2
|
— |
Q9BQK8.3 Phosphatidate phosphatase LPIN3 [Homo sapiens]
|
KAH7729483.1 lipin 3 [Aphelenchus avenae]
|
No
|
-0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.826|GO:0110165_0.818|GO:0008150_0.736|GO:0005622_0.697|GO:0009987_0.683|GO:0016020_0.629|GO:0003674_0.616|GO:0043226_0.604|GO:0005737_0.593|GO:0043229_0.592|GO:0043227_0.533|GO:0043231_0.528|GO:0008152_0.508|GO:0071944_0.506
|
IPR007651+1-89+|IPR013209+485-716+|IPR026058+360-720+|IPR031315+537-692+|IPR036412+531-676+
|
SM00775+537-692+
|
PF04571+1-89+lipin,_N-terminal_conserved_region|PF08235+485-716+LNS2_(Lipin/Ned1/Smp2)
|
— |
PTHR12181+360-720+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
91-403;763-792
|
2.000
|
1-90;404-762
|
6tzz_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.874
|
87883.950
|
7.394
|
5.000
|
28.283
|
9.848
|
53.283
|
46.717
|
14.773
|
13.510
|
53.030
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
2941.767
|
2037.214
|
2207.407
|
1755.874
|
2711.922
|
5016.186
|
3869.288
|
6806.816
|
2683.074
|
1706.159
|
2124.836
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.114
|
-0.352
|
-0.222
|
0.595
|
0.902
|
-0.363
|
— |
-0.670
|
— | — | — | — | — |
No JSON data available for plots.