Hg_chrom5_TN10mRNA_9393
Organism: Heterodera glycines Gene Locus: chr5:3064377-3067101 Feature type: polypeptideProtein Sequence
Length: 474
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.589 | 0.736 | 0.614 | 0.509 | 0.633 | 1.082 | 0.628 | 0.949 | 1.922 | 1.654 | 0.575 | 2.234 | 2.344 | 0.649 | 1.162 | 0.964 | 0.795 | 1.343 | 1.623 | 0.931 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8833
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Not_Clustered
|
0.477
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
endoplasmic_reticulum
|
— |
RKLRQNMEMIVAKKRKLC
|
— | — | — | — | — | — |
0.000
|
— | — |
0.138
|
0.196
|
0.012
|
0.128
|
0.741
|
0.351
|
0.606
|
0.007
|
0.432
|
0.014
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009220
|
1.000
|
1.000
|
Hsc_gene_19857.t1
|
Hsc_gene_19857.t1
|
— |
Q8BS95.2 Golgi pH regulator [Mus musculus]
|
KAI1704283.1 abscisic acid g-protein coupled receptor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0008150_0.959|GO:0009987_0.775|GO:0005575_0.744|GO:0110165_0.744|GO:0016020_0.727|GO:0005886_0.709|GO:0071944_0.709|GO:0003674_0.631|GO:0043226_0.613|GO:0005622_0.612|GO:0043229_0.592|GO:0043227_0.586|GO:0043231_0.572|GO:0032502_0.563|GO:0048856_0.563
|
IPR015672+29-473+|IPR022535+163-230+|IPR025969+300-469+
|
— |
PF12430+300-469+Abscisic_acid_G-protein_coupled_receptor|PF12537+163-230+The_Golgi_pH_Regulator_(GPHR)_Family_N-terminal
|
— |
PTHR15948+29-473+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-474
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
54660.750
|
9.472
|
15.500
|
18.565
|
15.612
|
37.553
|
62.447
|
11.392
|
7.173
|
42.194
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
979.563
|
1333.072
|
894.244
|
786.345
|
824.396
|
754.246
|
1084.884
|
1054.438
|
738.204
|
1207.576
|
1006.417
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.806
|
-0.899
|
— | — | — |
0.534
|
0.381
|
— | — | — | — | — | — |
No JSON data available for plots.