Hg_chrom5_TN10mRNA_9395
Organism: Heterodera glycines Gene Locus: chr5:3070834-3080205 Feature type: polypeptideProtein Sequence
Length: 1,624
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.124 | 0.673 | 0.761 | 0.828 | 0.78 | 1.516 | 0.718 | 0.893 | 0.766 | 1.722 | 0.383 | 1.232 | 1.3 | 1.089 | 1.495 | 1.249 | 0.808 | 0.97 | 1.61 | 0.525 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8835
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.790
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.081
|
0.158
|
0.056
|
0.216
|
0.553
|
0.506
|
0.499
|
0.019
|
0.720
|
0.045
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009221
|
1.000
|
1.000
|
Hsc_gene_19858.t1
|
Hsc_gene_19858.t1
|
— |
P34641.1 Protein ced-11 [Caenorhabditis elegans]
|
KAI1729333.1 protein ced-11 [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.976|GO:0009987_0.951|GO:0005575_0.626|GO:0110165_0.626|GO:0016020_0.573|GO:0071944_0.565|GO:0005886_0.561|GO:0051179_0.534|GO:0006810_0.524|GO:0051234_0.524|GO:0003674_0.506
|
IPR050927+521-1214+
|
— | — | — |
PTHR13800+521-1214+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
723-863;1325-1391
|
3.000
|
1-722;864-1324;1392-1624
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.785
|
180079.940
|
8.297
|
30.500
|
20.505
|
10.345
|
42.980
|
57.020
|
11.638
|
8.867
|
50.924
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
magenta
|
770.976
|
1320.948
|
1248.682
|
214.069
|
75.813
|
397.645
|
651.182
|
592.712
|
24.526
|
1666.733
|
962.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.311
|
-2.763
|
-2.435
|
-1.528
|
2.405
|
0.722
|
0.468
|
— |
-6.218
|
— | — | — | — |
No JSON data available for plots.