Hg_chrom5_TN10mRNA_9397
Organism: Heterodera glycines Gene Locus: chr5:3087857-3090615 Feature type: polypeptideProtein Sequence
Length: 415
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.728 | 0.841 | 0.613 | 1.496 | 1.486 | 1.483 | 0.918 | 1.205 | 1.339 | 0.977 | 1.424 | 0.425 | 0.87 | 0.695 | 0.639 | 0.861 | 1.462 | 0.84 | 1.668 | 0.496 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8837
|
— | — |
1.333
|
1.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.954
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.590
|
0.297
|
0.019
|
0.724
|
0.337
|
0.140
|
0.086
|
0.060
|
0.105
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009222
|
1.000
|
1.000
|
Hsc_gene_19860.t1
|
Hsc_gene_19860.t1;Hsc_gene_19860.t2
|
— |
G5EEI8.1 Cysteine and histidine-rich domain-containing protein 1 [Caenorhabditis elegans]
|
XP_024501911.1 Cysteine/histidine-rich domain and CS domain and HSP20-like chaperone domain-containing protein [Strongyloides ratti];CEF62709.1 Cysteine/histidine-rich domain and CS domain and HSP20-like chaperone domain-containing protein [Strongyloides ratti]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.684|GO:0003674_0.635|GO:0009987_0.628|GO:0005488_0.597|GO:0065007_0.586|GO:0005575_0.557|GO:0110165_0.554|GO:0050789_0.514
|
IPR007051+34-88_35-88_264-318_265-318+|IPR007052+96-180_101-169_326-410_331-399+|IPR008978+83-184_93-195_313-413_323-415+
|
— |
PF04968+34-88_264-318+CHORD|PF04969+101-169_331-399+CS_domain
|
— |
PTHR46983+222-409+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-415
|
2yrt_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.669
|
46127.500
|
7.459
|
6.000
|
27.229
|
9.398
|
51.566
|
48.434
|
14.940
|
12.289
|
49.398
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
yellow
|
1451.975
|
1458.487
|
892.057
|
1305.094
|
1312.481
|
1038.945
|
1491.653
|
1028.183
|
2946.047
|
945.267
|
1802.744
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.939
|
-0.297
|
0.658
|
— |
-0.322
|
0.534
|
— |
0.682
|
— | — | — | — | — |
No JSON data available for plots.