Hg_chrom5_TN10mRNA_9398
Organism: Heterodera glycines Gene Locus: chr5:3095467-3111455 Feature type: polypeptideProtein Sequence
Length: 2,858
(Signal peptide: 1-19)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.838 | 1.229 | 0.903 | 1.086 | 0.98 | 1.184 | 0.671 | 1.207 | 1.081 | 1.433 | 0.482 | 0.679 | 1.691 | 1.252 | 1.264 | 1.255 | 0.769 | 0.949 | 0.915 | 0.391 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8838
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
25-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
chloroplast
|
KKKK,PQAKRRP,KRWIHRRNPRNSRIRFK,RPRPLAKRWIHRRNPRNSRIR
|
— | — |
57-90
|
0.998
|
1-19
|
0.983
|
0.865
|
7.000
|
7.000
|
0.130
|
0.078
|
0.024
|
0.216
|
0.157
|
0.204
|
0.314
|
0.025
|
0.781
|
0.169
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004045
|
1.000
|
2.000
|
Hsc_gene_19861.t1;Hsc_gene_19861.t2
|
Hsc_gene_19861.t1;Hsc_gene_19861.t2;Hsc_gene_19862.t1
|
— |
G5EDK5.1 Cadherin EGF LAG seven-pass G-type receptor fmi-1 [Caenorhabditis elegans]
|
KAI1733203.1 cadherin domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004930|GO:0005509|GO:0005886|GO:0007155|GO:0007156|GO:0016020
|
GO:0008150_0.939|GO:0005575_0.877|GO:0110165_0.877|GO:0009987_0.842|GO:0016020_0.779|GO:0032501_0.749|GO:0032502_0.694|GO:0048856_0.688|GO:0071944_0.676|GO:0005886_0.668|GO:0065007_0.658|GO:0050789_0.646|GO:0007275_0.633|GO:0048731_0.605|GO:0050794_0.603|GO:0007399_0.535|GO:0050896_0.530|GO:0030154_0.526|GO:0048869_0.526|GO:0071840_0.522|GO:0016043_0.518|GO:0009653_0.502
|
IPR000742+1251-1311_1313-1349_1316-1349_1317-1346_1337-1348_1605-1645_1814-1849_1849-1890_1851-1890_1878-1889_1897-1950+|IPR001791+1396-1606_1398-1575_1416-1577_1426-1577_1653-1815_1655-1793_1674-1795_1682-1795+|IPR001879+1986-2065_2008-2070_2011-2062+|IPR001881+1313-1349+|IPR002049+1951-1988_1952-1994_1952-2005_1973-2005+|IPR002126+160-264_164-254_181-262_205-224_264-293_265-374_270-365_286-372_384-470_384-480_399-478_495-590_495-600_508-598_601-707_605-698_622-706_708-808_715-798_729-806_773-785_787-806_806-819_809-917_813-908_830-915_864-890_899-916_918-1031_922-1022_939-1029+|IPR013320+1337-1586_1626-1813+|IPR015919+158-271_252-381_362-481_473-592_588-703_703-808_801-910_905-1035+|IPR020894+362-372_468-478_588-598_796-806_905-915_1019-1029+|IPR036445+2009-2062_2010-2061+|IPR050174+343-437+
|
SM00008+2008-2070+|SM00112+181-262_286-372_399-478_508-598_622-706_729-806_830-915_939-1029+|SM00179+1313-1349+|SM00180+1952-2005+|SM00181+1251-1311_1316-1349_1605-1645_1814-1849_1851-1890_1897-1950+|SM00282+1416-1577_1674-1795+
|
PF00008+1317-1346+EGF-like_domain|PF00028+164-254_270-365_384-470_495-590_605-698_715-798_813-908_922-1022+Cadherin_domain|PF00053+1952-1994+Laminin_EGF_domain|PF02210+1426-1577_1682-1795+Laminin_G_domain|PF02793+2011-2062+Hormone_receptor_domain
|
G3DSA:2.10.25.10:FF:000095+1315-1351+Notch,_isoform_B|G3DSA:2.10.25.10:FF:000188+1951-2000+Laminin_subunit_gamma_2|G3DSA:2.60.40.60:FF:000020+261-379_483-601_702-807_808-921+Dachsous_cadherin-related_1b|G3DSA:2.60.40.60:FF:000092+157-260+Protocadherin_8
|
PTHR24028+343-437+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
2675-2858
|
1.000
|
1-2674
|
2yst_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.733
|
317776.400
|
6.330
|
-7.500
|
22.638
|
11.022
|
46.011
|
53.989
|
11.791
|
10.847
|
52.484
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
turquoise
|
705.809
|
1563.413
|
648.330
|
420.452
|
200.297
|
213.164
|
620.110
|
415.465
|
161.946
|
1435.993
|
889.973
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.498
|
-2.032
|
-0.516
|
-1.103
|
— |
1.550
|
0.866
|
0.715
|
-3.285
|
— | — | — | — |