Hg_chrom5_TN10mRNA_9399
Organism: Heterodera glycines Gene Locus: chr5:3113298-3124167 Feature type: polypeptideProtein Sequence
Length: 2,406
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.749 | 1.16 | 0.914 | 0.444 | 1.711 | 1.13 | 0.485 | 1.185 | 1.265 | 1.359 | 1.448 | 1.809 | 1.57 | 0.575 | 1.137 | 0.819 | 0.818 | 0.623 | 1.439 | 0.538 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8839
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
30-pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
nucleus
|
KRRK,RWVKRKL,KKVAKQKQQNVKKSER,KKLKKNTKNFFKKWKE,KRQKNGDEKMDEEKRKLV,KRWNGLTDCAEVNERRRTV,KRIIESNVGRFTEFVKRTR,AEKRKRRRENEQKRKTERERRRGAK
|
— | — | — | — | — |
0.860
|
0.123
|
0.000
|
— |
0.610
|
0.111
|
0.004
|
0.524
|
0.089
|
0.164
|
0.114
|
0.012
|
0.100
|
0.171
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002188
|
1.000
|
3.000
|
Hsc_gene_19863.t1;Hsc_gene_19863.t2;Hsc_gene_19863.t3
|
— | — | — |
XP_053692000.1 poly(A) polymerase type 3-like [Sabethes cyaneus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003723|GO:0016779|GO:0031123|GO:1990817
|
GO:0005575_0.742|GO:0110165_0.742|GO:0005622_0.698|GO:0016020_0.660|GO:0043226_0.644|GO:0043229_0.607|GO:0008150_0.594|GO:0003674_0.542|GO:0043227_0.542|GO:0043231_0.512
|
IPR007012+2108-2241+|IPR011068+2261-2354+|IPR043519+1938-2051_1949-2094+
|
— |
PF04928+2108-2241+Poly(A)_polymerase_central_domain
|
— |
PTHR10682+1946-2376+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
682-791;1365-1428;1479-1665;1777-1836
|
5.000
|
1-681;792-1364;1429-1478;1666-1776;1837-2406
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.520
|
280268.340
|
7.381
|
24.500
|
32.793
|
11.721
|
52.909
|
47.091
|
17.498
|
15.295
|
39.651
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
skyblue3
|
1317.085
|
11.963
|
145.857
|
332.837
|
117.395
|
21.654
|
37.831
|
18.222
|
2692.066
|
3486.039
|
3145.765
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.380
|
4.664
|
1.300
|
-1.533
|
-2.425
|
0.813
|
— |
1.194
|
— |
-2.837
|
-4.531
|
— | — |