Hg_chrom5_TN10mRNA_9411
Organism: Heterodera glycines Gene Locus: chr5:3156955-3162343 Feature type: polypeptideProtein Sequence
Length: 1,063
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 0.897 | 1.009 | 0.779 | 1.286 | 0.917 | 0.504 | 1.646 | 0.815 | 1.64 | 0.869 | 1.383 | 1.28 | 1.176 | 1.651 | 0.806 | 0.771 | 0.784 | 1.52 | 0.802 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8848
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
2.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.508
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RKKR,GKWRRKRKKKK
|
14-34
|
1.000
|
— | — | — | — |
0.000
|
— | — |
0.177
|
0.937
|
0.029
|
0.190
|
0.036
|
0.074
|
0.054
|
0.032
|
0.051
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002189
|
1.000
|
3.000
|
Hsc_gene_19877.t1;Hsc_gene_5147.t1;Hsc_gene_5148.t1
|
Hsc_gene_19876.t1;Hsc_gene_19876.t2;Hsc_gene_19877.t1;Hsc_gene_5147.t1
|
— |
Q8BKF1.1 DNA-directed RNA polymerase, mitochondrial [Mus musculus]
|
KAF7631131.1 DNA-directed RNA polymerase [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003677|GO:0003899|GO:0006351
|
GO:0005575_0.818|GO:0110165_0.811|GO:0005622_0.760|GO:0016020_0.732|GO:0043226_0.703|GO:0043229_0.687|GO:0005737_0.667|GO:0043227_0.661|GO:0043231_0.641|GO:0008150_0.572|GO:0003674_0.565
|
IPR002092+95-1063_750-761_825-839+|IPR043502+82-460_558-1063+|IPR046950+661-1063+
|
— |
PF00940+661-1063+DNA-dependent_RNA_polymerase
|
— |
PTHR10102+95-1063+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-1063
|
9bdd_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.652
|
123201.460
|
8.017
|
23.500
|
30.386
|
12.606
|
48.166
|
51.834
|
17.121
|
13.264
|
44.120
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
greenyellow
|
1686.427
|
2499.131
|
1415.011
|
1339.342
|
1463.579
|
1119.331
|
2200.700
|
984.905
|
1309.138
|
2263.013
|
1854.210
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.050
|
-1.037
|
— | — |
-0.373
|
0.986
|
-0.289
|
1.302
|
— | — | — | — | — |
No JSON data available for plots.