Hg_chrom5_TN10mRNA_9412
Organism: Heterodera glycines Gene Locus: chr5:3173019-3179026 Feature type: polypeptideProtein Sequence
Length: 1,115
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.761 | 1.335 | 0.75 | 0.928 | 0.792 | 1.012 | 0.843 | 0.807 | 1.076 | 1.212 | 0.53 | 1.688 | 1.545 | 0.931 | 1.611 | 1.192 | 1.147 | 0.924 | 1.104 | 0.633 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8849
|
— | — |
1.444
|
2.000
|
2.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
7-ppJ2
|
0.970
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
49-69
|
0.995
|
20-65
|
0.998
|
— | — |
0.001
|
— | — |
0.087
|
0.063
|
0.017
|
0.297
|
0.244
|
0.456
|
0.275
|
0.035
|
0.806
|
0.138
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002187
|
2.000
|
2.000
|
Hsc_gene_19859.t1;Hsc_gene_19859.t2
|
Hsc_gene_19879.t2
|
— |
Q23310.2 Receptor-type guanylate cyclase gcy-14 [Caenorhabditis elegans]
|
AAC72366.2 guanylyl cyclase [Heterodera glycines]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0004713|GO:0005524|GO:0006468
|
GO:0008150_0.967|GO:0050896_0.778|GO:0005575_0.765|GO:0110165_0.745|GO:0032501_0.711|GO:0009987_0.638|GO:0016020_0.561|GO:0071944_0.560|GO:0003674_0.551|GO:0005886_0.541|GO:0065007_0.514|GO:0009605_0.511
|
IPR000719+568-842+|IPR001245+623-723+|IPR001828+71-442+|IPR011009+602-728+|IPR020635+583-838+|IPR028082+49-492+|IPR050401+142-939+
|
SM00219+583-838+
|
PF01094+71-442+Receptor_family_ligand_binding_region|PF07714+623-723+Protein_tyrosine_and_serine/threonine_kinase
|
— |
PTHR11920+142-939+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1103-1115
|
1.000
|
1-1102
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.907
|
124712.540
|
9.106
|
37.000
|
21.883
|
10.762
|
46.906
|
53.094
|
13.004
|
8.879
|
52.466
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
69.423
|
25.110
|
113.840
|
47.994
|
15.697
|
6.765
|
23.162
|
31.519
|
25.608
|
185.486
|
116.967
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.952
|
0.797
|
-1.138
|
-1.648
|
-1.198
|
1.789
|
2.124
|
— | — | — | — | — | — |
No JSON data available for plots.