SCN Proteipedia

Hg_chrom5_TN10mRNA_9413

Organism: Heterodera glycines Gene Locus: chr5:3182556-3185816 Feature type: polypeptide

Protein Sequence

Length: 736

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.98	0.822	0.84	0.937	1.359	0.732	0.857	0.815	1.479	1.377	1.194	1.039	1.208	0.836	1.054	0.796	0.735	1.009	0.836	0.799	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8850	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	0.983

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	signal_peptide\|transmembrane_domain	endoplasmic_reticulum	—	—	—	—	—	—	—	—	0.000	—	—	0.107	0.472	0.067	0.339	0.848	0.346	0.441	0.050	0.493	0.116

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002190	2.000	2.000	Hsc_gene_19881.t1;Hsc_gene_7295.t1	Hsc_gene_19881.t1;Hsc_gene_5152.t2;Hsc_gene_7295.t1	—	O60488.2 Long-chain-fatty-acid--CoA ligase 4 [Homo sapiens]	KAI1731937.1 AMP-binding enzyme domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	—	GO:0008150_0.942\|GO:0009987_0.887\|GO:0003674_0.853\|GO:0005575_0.828\|GO:0110165_0.822\|GO:0008152_0.779\|GO:0016020_0.749\|GO:0005622_0.740\|GO:0044237_0.740\|GO:0044238_0.739\|GO:0003824_0.710\|GO:0005737_0.704\|GO:0043226_0.699\|GO:0044281_0.688\|GO:0043229_0.674\|GO:0006082_0.665\|GO:0006629_0.665\|GO:0019752_0.665\|GO:0043436_0.665\|GO:0044255_0.660\|GO:0032787_0.659\|GO:0006631_0.657\|GO:0016787_0.649\|GO:0001676_0.627\|GO:0016462_0.624\|GO:0016817_0.624\|GO:0016818_0.624\|GO:0017111_0.624\|GO:0043227_0.619\|GO:0016887_0.617\|GO:0140657_0.617\|GO:0016874_0.615\|GO:0004467_0.608\|GO:0015645_0.608\|GO:0016405_0.608\|GO:0016877_0.608\|GO:0016878_0.608\|GO:0120515_0.608\|GO:0043231_0.600	IPR000873+133-557+\|IPR020459+298-309_310-318+\|IPR020845+303-314+\|IPR025110+613-699+\|IPR042099+117-595+\|IPR045851+596-728+	—	PF00501+133-557+AMP-binding_enzyme\|PF13193+613-699+AMP-binding_enzyme_C-terminal_domain	—	PTHR43272+76-733+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-5	1.000	6-736	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.661	81915.780	7.602	8.000	27.446	9.783	43.886	56.114	14.674	12.772	47.554

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkred	red	1974.621	1852.228	1778.698	1630.853	1941.676	1908.560	2728.371	2182.618	1142.495	2523.470	1931.624

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.289	-0.321	—	0.221	—	0.527	—	0.466	—	—	—	—	—

No JSON data available for plots.

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