Hg_chrom5_TN10mRNA_9415
Organism: Heterodera glycines Gene Locus: chr5:3195864-3199358 Feature type: polypeptideProtein Sequence
Length: 708
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.739 | 1.38 | 0.668 | 0.341 | 1.389 | 0.978 | 0.874 | 1.13 | 1.255 | 1.584 | 1.134 | 1.828 | 1.255 | 0.57 | 1.47 | 1.049 | 0.741 | 0.449 | 0.978 | 0.748 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8852
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide
|
extracellular
|
— |
KVKK,KKAKRELKELLMRDREK,RKETRERLGKAFTRRMEK,KKPNWKNAENYLLRIGKK
|
8-29
|
0.992
|
— | — | — | — |
0.000
|
— | — |
0.152
|
0.164
|
0.124
|
0.183
|
0.518
|
0.161
|
0.286
|
0.014
|
0.261
|
0.576
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004049
|
1.000
|
2.000
|
Hsc_gene_19884.t1;Hsc_gene_19884.t2
|
Hsc_gene_19884.t1;Hsc_gene_19884.t2
|
— | — | — |
No
|
-0.090
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
273-420;654-708
|
2.000
|
1-272;421-653
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.868
|
80732.530
|
9.820
|
27.000
|
28.955
|
10.593
|
50.565
|
49.435
|
16.949
|
12.006
|
42.090
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
darkolivegreen
|
270.325
|
6.734
|
107.535
|
125.473
|
24.853
|
5.255
|
8.809
|
13.516
|
422.215
|
756.445
|
613.204
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3.769
|
4.083
|
0.332
|
-2.373
|
-2.225
|
— | — | — | — | — |
-4.660
|
— | — |
No JSON data available for plots.