Hg_chrom5_TN10mRNA_9421
Organism: Heterodera glycines Gene Locus: chr5:3211033-3212084 Feature type: polypeptideProtein Sequence
Length: 123
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.662 | 0.945 | 0.887 | 0.28 | 2.304 | 1.459 | 0.29 | 2.033 | 0.723 | 1.318 | 1.601 | 0.956 | 0.678 | 1.094 | 0.498 | 0.813 | 1.466 | 1.232 | 0.0 | 0.0 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8858
|
— | — |
1.333
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
3.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
27-ppJ2_pJ2_J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_export_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.353
|
0.267
|
0.013
|
0.801
|
0.109
|
0.159
|
0.245
|
0.025
|
0.358
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009229
|
1.000
|
1.000
|
Hsc_gene_19888.t1
|
Hsc_gene_19888.t1
|
— |
O17389.2 Thymosin beta [Caenorhabditis elegans]
|
KAI1707268.1 thymosin beta-4 family domain-containing protein [Ditylenchus destructor]
|
No
|
-0.600
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003785|GO:0007015
|
— |
IPR001152+14-54_24-56_58-94_61-91+|IPR038386+23-54_56-91+
|
SM00152+24-56_58-94+
|
PF01290+14-54_61-91+Thymosin_beta-4_family
|
— |
PTHR20940+6-114+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-123
|
0.000
|
— | — | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.822
|
13870.630
|
5.044
|
-4.500
|
35.772
|
6.504
|
60.163
|
39.837
|
17.073
|
18.699
|
46.341
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
lightyellow
|
yellow
|
3636.665
|
691.896
|
2201.171
|
1930.688
|
2808.066
|
4576.998
|
5232.542
|
8102.727
|
4498.786
|
2957.289
|
3617.930
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.441
|
1.343
|
— |
0.509
|
0.719
|
0.204
|
0.724
|
-0.489
|
— | — | — | — | — |
No JSON data available for plots.