Hg_chrom5_TN10mRNA_9422
Organism: Heterodera glycines Gene Locus: chr5:3212311-3219344 Feature type: polypeptideProtein Sequence
Length: 796
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.628 | 0.993 | 1.005 | 1.256 | 0.817 | 1.385 | 0.553 | 1.759 | 1.173 | 1.358 | 0.514 | 1.33 | 1.326 | 0.991 | 1.359 | 1.184 | 1.03 | 0.895 | 1.836 | 0.665 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8859
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
peroxisomal_targeting_signal
|
cytoplasm
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.241
|
0.287
|
0.035
|
0.684
|
0.179
|
0.408
|
0.367
|
0.314
|
0.302
|
0.120
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009230
|
1.000
|
1.000
|
Hsc_gene_19889.t1
|
Hsc_gene_19889.t1;Hsc_gene_19889.t2
|
— |
O75808.1 Calpain-15 [Homo sapiens]
|
KAI1711398.1 calpain family cysteine protease domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004198|GO:0006508
|
GO:0008150_0.834|GO:0005575_0.698|GO:0110165_0.698|GO:0003674_0.626|GO:0009987_0.598|GO:0005622_0.542|GO:0032501_0.509
|
IPR000169+272-283+|IPR001300+197-533_204-519_215-523_216-520+|IPR001876+6-37_12-31_97-126_101-120+|IPR022684+200-223_272-288_336-359_361-388_499-520_609-637+|IPR038765+190-525+|IPR050420+189-737+
|
SM00230+197-533+
|
PF00648+216-520+Calpain_family_cysteine_protease
|
— |
PTHR10183+189-737+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-796
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.677
|
90921.770
|
7.197
|
11.000
|
23.995
|
12.940
|
48.241
|
51.759
|
13.568
|
10.427
|
49.121
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
darkorange
|
1948.457
|
2185.982
|
1732.255
|
1385.104
|
1258.428
|
1387.587
|
1527.513
|
2347.997
|
959.333
|
3370.677
|
2337.244
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.565
|
-0.795
|
-0.214
|
-0.171
|
0.156
|
0.148
|
0.653
|
-0.478
|
— | — | — | — | — |
No JSON data available for plots.