Hg_chrom5_TN10mRNA_9426
Organism: Heterodera glycines Gene Locus: chr5:3241370-3242140 Feature type: polypeptideProtein Sequence
Length: 205
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.737 | 1.929 | 0.887 | 0.505 | 0.976 | 1.376 | 0.523 | 1.463 | 1.843 | 0.857 | 0.517 | 1.722 | 1.22 | 0.938 | 2.19 | 0.627 | 0.88 | 0.887 | 1.126 | 0.717 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8863
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
5-Not_Clustered
|
0.792
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKKK
|
1-26
|
0.929
|
— | — | — | — |
0.000
|
— | — |
0.790
|
0.195
|
0.046
|
0.415
|
0.087
|
0.069
|
0.036
|
0.012
|
0.113
|
0.241
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0000070
|
17.000
|
1.000
|
Hsc_gene_9188.t3
|
— | — | — |
KAF7629220.1 MULE domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — |
PTHR47160+16-173+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-29
|
1.000
|
30-205
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.828
|
23908.250
|
9.972
|
10.000
|
27.805
|
11.220
|
51.220
|
48.780
|
17.073
|
10.732
|
45.854
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
magenta
|
grey
|
13.174
|
5.751
|
6.121
|
16.076
|
22.126
|
15.325
|
7.309
|
6.106
|
4.146
|
24.970
|
16.045
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
1.347
|
1.503
|
— | — |
-1.060
|
-1.431
|
— | — | — | — | — | — |
No JSON data available for plots.