Hg_chrom5_TN10mRNA_9429
Organism: Heterodera glycines Gene Locus: chr5:3247813-3249570 Feature type: polypeptideProtein Sequence
Length: 313
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.003 | 1.189 | 1.22 | 0.441 | 1.012 | 1.884 | 0.494 | 1.597 | 1.065 | 1.684 | 0.726 | 0.376 | 1.242 | 0.43 | 1.174 | 1.187 | 0.629 | 1.21 | 0.246 | 0.564 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8866
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— | — | — | — |
6-47
|
0.986
|
— | — |
0.000
|
— | — |
0.434
|
0.199
|
0.013
|
0.494
|
0.205
|
0.243
|
0.305
|
0.022
|
0.032
|
0.043
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009233
|
1.000
|
1.000
|
Hsc_gene_19893.t1
|
Hsc_gene_19893.t1;Hsc_gene_2709.t1
|
— |
Q9VCY3.1 COP9 signalosome complex subunit 6 [Drosophila melanogaster]
|
KAF7640071.1 MPN domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0008233|GO:0008237
|
GO:0008150_0.768|GO:0005575_0.752|GO:0110165_0.751|GO:0005622_0.702|GO:0016020_0.634|GO:0043226_0.588|GO:0043229_0.576|GO:0043227_0.528|GO:0009987_0.514|GO:0043231_0.512
|
IPR000555+5-107_7-146+|IPR024969+167-274+|IPR037518+8-147+
|
SM00232+7-146+
|
PF01398+5-107+JAB1/Mov34/MPN/PAD-1_ubiquitin_protease|PF13012+167-274+Maintenance_of_mitochondrial_structure_and_function
|
— |
PTHR10540+6-292+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-313
|
4e0q_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.547
|
35073.650
|
6.174
|
-2.000
|
26.518
|
9.904
|
51.118
|
48.882
|
13.738
|
12.780
|
48.243
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
lightcyan
|
1009.483
|
673.835
|
748.625
|
970.377
|
1122.041
|
1131.635
|
1243.403
|
1286.553
|
455.404
|
1383.760
|
985.893
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.389
|
0.483
|
0.178
|
— | — | — | — | — | — | — | — | — |
No JSON data available for plots.