Hg_chrom5_TN10mRNA_9430
Organism: Heterodera glycines Gene Locus: chr5:3249794-3253154 Feature type: polypeptideProtein Sequence
Length: 712
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.192 | 0.915 | 0.919 | 0.775 | 1.241 | 1.08 | 0.619 | 1.896 | 0.624 | 1.537 | 0.617 | 0.991 | 1.6 | 0.702 | 1.404 | 1.244 | 0.76 | 0.851 | 0.648 | 0.537 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8867
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— | — |
8-28
|
0.997
|
4-37
|
0.997
|
— | — |
0.000
|
— | — |
0.206
|
0.886
|
0.009
|
0.330
|
0.027
|
0.074
|
0.117
|
0.065
|
0.049
|
0.062
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009234
|
1.000
|
1.000
|
Hsc_gene_19894.t1
|
Hsc_gene_19894.t1
|
— |
Q99797.2 Mitochondrial intermediate peptidase [Homo sapiens]
|
KAI1705539.1 peptidase family m3 domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004222|GO:0006508|GO:0008237
|
GO:0005575_0.869|GO:0110165_0.867|GO:0005622_0.784|GO:0016020_0.751|GO:0043226_0.713|GO:0005737_0.701|GO:0043229_0.698|GO:0043227_0.671|GO:0043231_0.643|GO:0003674_0.529|GO:0005739_0.504|GO:0008150_0.501
|
IPR001567+233-684+|IPR024077+214-681+|IPR024079+365-527+|IPR033851+43-689+|IPR045090+36-684+
|
— |
PF01432+233-684+Peptidase_family_M3
|
— |
PTHR11804+36-684+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-712
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.563
|
79567.970
|
6.653
|
2.500
|
27.247
|
12.219
|
48.736
|
51.264
|
14.747
|
12.500
|
49.298
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
brown
|
1065.697
|
1257.619
|
1146.200
|
1590.617
|
1857.216
|
1401.491
|
2029.027
|
1048.263
|
493.730
|
418.216
|
450.579
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.364
|
0.202
|
0.582
|
0.192
|
-0.391
|
0.544
|
-0.525
|
1.096
|
— | — |
2.265
|
— | — |
No JSON data available for plots.