Hg_chrom5_TN10mRNA_9433
Organism: Heterodera glycines Gene Locus: chr5:3255512-3258727 Feature type: polypeptideProtein Sequence
Length: 662
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.755 | 0.703 | 1.566 | 0.052 | 1.611 | 1.317 | 0.522 | 0.982 | 0.806 | 1.409 | 0.824 | 2.221 | 0.923 | 1.104 | 1.696 | 1.014 | 0.743 | 0.893 | 0.349 | 0.578 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8870
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRR,KKRKR,HPKKRK,KREKTPRKSTGRKRRLA
|
— | — | — | — | — | — |
0.000
|
— | — |
0.931
|
0.105
|
0.005
|
0.191
|
0.028
|
0.036
|
0.012
|
0.006
|
0.014
|
0.009
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009237
|
1.000
|
1.000
|
Hsc_gene_19897.t1
|
Hsc_gene_19897.t1;Hsc_gene_2712.t1
|
— | — |
KAI1713864.1 meiotic recombination protein REC8 like protein [Ditylenchus destructor]
|
No
|
0.040
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515|GO:0007062|GO:0008278
|
GO:0008150_0.951|GO:0005575_0.933|GO:0110165_0.923|GO:0009987_0.912|GO:0005622_0.895|GO:0016020_0.867|GO:0043226_0.839|GO:0043229_0.814|GO:0008152_0.789|GO:0043170_0.789|GO:0071840_0.789|GO:0016043_0.787|GO:0044238_0.782|GO:0032502_0.774|GO:0043227_0.774|GO:0043231_0.764|GO:0006139_0.757|GO:0090304_0.739|GO:0006996_0.727|GO:0022414_0.700|GO:0007049_0.692|GO:0022402_0.692|GO:0003006_0.691|GO:0000280_0.690|GO:0019953_0.690|GO:0048285_0.690|GO:0006259_0.685|GO:0007276_0.684|GO:0048609_0.684|GO:0048232_0.681|GO:0051276_0.681|GO:0007283_0.679|GO:0051321_0.679|GO:0140013_0.679|GO:1903046_0.679|GO:0061982_0.676|GO:0006310_0.675|GO:0022403_0.675|GO:0044848_0.675|GO:0000279_0.674|GO:0051326_0.674|GO:0005634_0.673|GO:0098762_0.673|GO:0007127_0.670|GO:0007134_0.670|GO:0098764_0.670
|
IPR006909+609-645+|IPR006910+1-108+|IPR023093+575-649+|IPR036390+599-646+|IPR039781+1-647+
|
— |
PF04824+609-645+Conserved_region_of_Rad21_/_Rec8_like_protein|PF04825+1-108+N_terminus_of_Rad21_/_Rec8_like_protein
|
— |
PTHR12585+1-647+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
104-585;654-662
|
2.000
|
1-103;586-653
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.692
|
75685.310
|
4.795
|
-23.500
|
33.988
|
7.704
|
53.776
|
46.224
|
15.710
|
18.278
|
45.921
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
red
|
636.515
|
97.728
|
180.925
|
368.217
|
1312.744
|
665.478
|
1548.138
|
221.744
|
0.514
|
1136.255
|
649.509
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.656
|
1.777
|
1.136
|
1.803
|
-0.966
|
1.230
|
-1.694
|
2.949
|
-10.449
|
8.898
|
— | — | — |
No JSON data available for plots.