Hg_chrom5_TN10mRNA_9434
Organism: Heterodera glycines Gene Locus: chr5:3261288-3273713 Feature type: polypeptideProtein Sequence
Length: 3,433
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.66 | 1.145 | 1.059 | 0.512 | 1.282 | 1.307 | 0.51 | 1.136 | 1.288 | 1.661 | 0.909 | 1.542 | 1.173 | 0.655 | 1.195 | 1.02 | 0.802 | 0.967 | 1.412 | 0.677 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8871
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_Clustered
|
0.794
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— |
KRKR,KTEEG
|
— | — | — | — | — | — |
0.000
|
— | — |
0.126
|
0.158
|
0.025
|
0.710
|
0.144
|
0.245
|
0.141
|
0.009
|
0.368
|
0.038
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009238
|
1.000
|
1.000
|
Hsc_gene_19951.t1
|
Hsc_gene_19951.t1;Hsc_gene_25342.t1;Hsc_gene_25343.t1
|
— |
Q19020.1 Dynein heavy chain, cytoplasmic [Caenorhabditis elegans]
|
KAI1727053.1 dynein heavy chain and region d6 of dynein motor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0007018|GO:0008569|GO:0016887|GO:0030286|GO:0045505|GO:0051959
|
GO:0008150_0.948|GO:0005575_0.932|GO:0110165_0.928|GO:0009987_0.907|GO:0005622_0.878|GO:0043226_0.834|GO:0016020_0.797|GO:0043229_0.787|GO:0071944_0.764|GO:0005737_0.724|GO:0005886_0.693|GO:0043227_0.660|GO:0051179_0.633|GO:0043228_0.625|GO:0043232_0.624|GO:0007017_0.609|GO:0051234_0.601|GO:0006810_0.599|GO:0005856_0.596|GO:0016043_0.591|GO:0071840_0.591|GO:0003674_0.584|GO:0007018_0.547|GO:0051641_0.547|GO:0032991_0.542|GO:0006996_0.532|GO:0015630_0.518|GO:0051649_0.508
|
IPR003593+804-953_1111-1262_1466-1616_1809-1975+|IPR004273+2842-2949+|IPR013602+229-629+|IPR024317+1788-2065+|IPR024743+2081-2410+|IPR026983+2801-3341+|IPR027417+786-937_787-997_1041-1261_1068-1263_1447-1973_1463-1727_1782-2080_2429-2613_2828-2952+|IPR035699+771-1003_1022-1126+|IPR035706+2440-2672+|IPR041228+3141-3428+|IPR041466+1309-1428+|IPR041658+2982-3132+|IPR042219+2953-3129+|IPR042222+384-533+|IPR042228+535-632+|IPR043157+938-1067+|IPR043160+3308-3431+|IPR054354+1630-1722+
|
SM00382+804-953_1111-1262_1466-1616_1809-1975+
|
PF03028+2842-2949+Dynein_heavy_chain_region_D6_P-loop_domain|PF08393+229-629+Dynein_heavy_chain,_N-terminal_region_2|PF12774+771-1003_1022-1126+Hydrolytic_ATP_binding_site_of_dynein_motor_region|PF12775+1446-1616+P-loop_containing_dynein_motor_region|PF12777+2081-2410+Microtubule-binding_stalk_of_dynein_motor|PF12780+1788-2065+P-loop_containing_dynein_motor_region_D4|PF12781+2440-2672+ATP-binding_dynein_motor_region|PF17852+1309-1428+Dynein_heavy_chain_AAA_lid_domain|PF18198+2982-3132+Dynein_heavy_chain_AAA_lid_domain|PF18199+3141-3428+Dynein_heavy_chain_C-terminal_domain|PF22597+1630-1722+Dynein_heavy_chain,_ATPase_lid_domain
|
G3DSA:1.10.287.2620:FF:000001+317-380+Cytoplasmic_dynein_heavy_chain_1|G3DSA:1.10.8.710:FF:000005+938-1066+Cytoplasmic_dynein_heavy_chain_1|G3DSA:1.10.8.720:FF:000003+2953-3129+Cytoplasmic_dynein_heavy_chain_2|G3DSA:1.20.1270.280:FF:000004+3132-3306+Cytoplasmic_dynein_heavy_chain_2|G3DSA:1.20.140.100:FF:000002+383-533+Cytoplasmic_dynein_heavy_chain_1|G3DSA:1.20.58.1120:FF:000013+638-785+Dynein_heavy_chain-like_protein|G3DSA:1.20.920.20:FF:000002+2053-2392+Cytoplasmic_dynein_1_heavy_chain|G3DSA:3.20.180.20:FF:000002+535-633+Cytoplasmic_dynein_heavy_chain_1|G3DSA:3.40.50.300:FF:000071+786-937+Cytoplasmic_dynein_heavy_chain_1|G3DSA:3.40.50.300:FF:000122+2429-2613+Cytoplasmic_dynein_1_heavy_chain|G3DSA:3.40.50.300:FF:000373+2828-2952+Cytoplasmic_dynein_heavy_chain_2|G3DSA:3.40.50.300:FF:000517+1069-1304+Cytoplasmic_dynein_heavy_chain_1
|
PTHR45703+2801-3341+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
2075-2171
|
2.000
|
1-2074;2172-3433
|
6f3a_f
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.504
|
394265.050
|
6.152
|
-18.000
|
27.643
|
10.632
|
49.694
|
50.306
|
14.128
|
13.516
|
44.014
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
orange
|
11401.740
|
14688.360
|
10701.972
|
11450.697
|
11357.077
|
10394.402
|
9541.701
|
9481.986
|
14219.875
|
10111.636
|
11872.310
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.685
|
-0.496
|
0.205
|
— | — | — |
-0.238
|
— | — | — | — | — | — |
No JSON data available for plots.