SCN Proteipedia

Hg_chrom5_TN10mRNA_9435

Organism: Heterodera glycines Gene Locus: chr5:3276983-3280239 Feature type: polypeptide

Protein Sequence

Length: 741

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.847	0.942	1.055	0.791	1.057	1.073	0.546	1.282	0.81	1.623	0.941	1.35	1.275	0.727	1.68	1.041	0.686	1.043	1.246	0.635	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8872	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.617

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm	—	KRLVVNRAKRVKMIKK	—	—	—	—	—	—	0.000	—	—	0.501	0.459	0.093	0.506	0.092	0.038	0.124	0.052	0.056	0.082

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002191	2.000	2.000	Hsc_gene_19899.t1;Hsc_gene_19899.t2	Hsc_gene_2711.t1	—	Q9NAA7.2 26S rRNA (cytosine-C(5))-methyltransferase nsun-5 [Caenorhabditis elegans]	ETN82528.1 methyltransferase domain protein [Necator americanus]	No	-0.260

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001510\|GO:0008168\|GO:0008173	GO:0008150_0.870\|GO:0009987_0.786\|GO:0003674_0.761\|GO:0005575_0.649\|GO:0008152_0.644\|GO:0110165_0.641\|GO:0044238_0.631\|GO:0044237_0.623\|GO:0009058_0.617\|GO:0043170_0.610\|GO:0003824_0.604\|GO:0044249_0.597\|GO:0009059_0.584\|GO:0005622_0.581\|GO:0006139_0.575\|GO:0010467_0.570\|GO:0016740_0.561\|GO:0090304_0.561\|GO:0034654_0.558\|GO:0141187_0.551\|GO:0016070_0.547\|GO:0032774_0.543\|GO:0043412_0.542\|GO:0140640_0.520\|GO:0140098_0.518\|GO:0006396_0.515\|GO:0008168_0.515\|GO:0008757_0.515\|GO:0016741_0.515\|GO:0008173_0.512\|GO:0016020_0.509\|GO:0001510_0.506\|GO:0009451_0.506\|GO:0032259_0.506\|GO:0043414_0.506	IPR001678+429-739+\|IPR023267+511-525_540-550_609-621_660-676_721-738+\|IPR026113+51-335+\|IPR029063+115-327_152-340_437-738_520-741+\|IPR049560+529-736+\|IPR049561+437-520+	—	PF01189+529-736+16S_rRNA_methyltransferase_RsmB/F\|PF13489+140-314+Methyltransferase_domain\|PF21148+437-520+NOL1/NOP2/Sun_domain_family_member_5,_ferredoxin-like_domain	—	PTHR22809+51-335+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	—	—	1.000	1-741	2b9e_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.754	84808.580	9.109	26.500	29.150	10.931	48.853	51.147	17.004	12.146	46.154

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	716.300	739.072	454.596	580.048	582.808	479.791	765.697	846.506	568.988	1038.875	837.495

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.931	-0.487	0.460	—	-0.266	0.686	0.715	—	—	—	—	—	—

No JSON data available for plots.

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