SCN Proteipedia

Hg_chrom5_TN10mRNA_9439

Organism: Heterodera glycines Gene Locus: chr5:3286554-3290045 Feature type: polypeptide

Protein Sequence

Length: 693

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.99	1.141	0.603	0.547	1.058	1.591	0.464	1.804	1.251	1.775	0.547	0.849	1.122	1.221	1.472	1.051	0.781	0.896	0.555	0.424	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8875	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	—	—	36-58	0.908	—	—	0.000	—	—	0.636	0.339	0.013	0.543	0.116	0.321	0.192	0.123	0.076	0.120

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004053	2.000	1.000	Hsc_gene_19902.t1	Hsc_gene_19902.t1	—	Q03570.6 Mediator of RNA polymerase II transcription subunit 14 [Caenorhabditis elegans]	KAI1700697.1 mediator complex subunit MED14 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003712\|GO:0006357\|GO:0016592	GO:0008150_0.956\|GO:0005575_0.919\|GO:0110165_0.919\|GO:0009987_0.917\|GO:0065007_0.883\|GO:0050789_0.863\|GO:0003674_0.857\|GO:0005622_0.857\|GO:0016020_0.855\|GO:0050794_0.849\|GO:0043226_0.807\|GO:0005488_0.800\|GO:0008152_0.796\|GO:0043229_0.792\|GO:0043170_0.784\|GO:0044238_0.784\|GO:0009058_0.783\|GO:0044237_0.773\|GO:0005515_0.767\|GO:0044249_0.759\|GO:0009059_0.756\|GO:0019222_0.756\|GO:0043227_0.750\|GO:0031323_0.747\|GO:0010467_0.743\|GO:0043231_0.740\|GO:0006139_0.738\|GO:0060255_0.737\|GO:0080090_0.735\|GO:0090304_0.727\|GO:0034654_0.726\|GO:0009889_0.725\|GO:0010556_0.724\|GO:0031326_0.724\|GO:0141187_0.722\|GO:0010468_0.721\|GO:0016070_0.716\|GO:0032774_0.712\|GO:0019219_0.705\|GO:0006351_0.700\|GO:0051252_0.700\|GO:0006355_0.695\|GO:2001141_0.695\|GO:0006366_0.690\|GO:0006357_0.688\|GO:0140110_0.662\|GO:0060090_0.660\|GO:0030674_0.658\|GO:0032991_0.658\|GO:0003712_0.655\|GO:0005634_0.645\|GO:0140513_0.563\|GO:0005667_0.547\|GO:0016592_0.540\|GO:0070847_0.540\|GO:0090575_0.540\|GO:0048518_0.512	IPR013947+64-681_73-262+	—	PF08638+73-262+Mediator_complex_subunit_MED14	—	PTHR12809+64-681+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-46;674-693	1.000	47-673	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.771	77867.560	8.685	20.500	24.098	9.812	47.330	52.670	14.430	9.668	46.609

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	288.164	197.010	189.278	183.735	243.855	215.509	588.998	233.318	22.364	549.558	323.618

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.290	-0.238	—	0.378	—	1.462	—	1.480	-4.729	—	—	—	—

No JSON data available for plots.

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