Hg_chrom5_TN10mRNA_9440
Organism: Heterodera glycines Gene Locus: chr5:3290136-3292352 Feature type: polypeptideProtein Sequence
Length: 293
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.516 | 1.667 | 1.055 | 1.412 | 0.626 | 1.575 | 0.244 | 1.365 | 1.744 | 1.199 | 0.517 | 1.004 | 1.706 | 0.394 | 0.766 | 1.755 | 1.063 | 0.724 | 1.838 | 1.205 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8876
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Egg_Male
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — |
1-18
|
0.990
|
1.000
|
1.000
|
1.000
|
0.229
|
0.049
|
0.051
|
0.280
|
0.311
|
0.802
|
0.507
|
0.079
|
0.526
|
0.071
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004054
|
2.000
|
1.000
|
Hsc_gene_19903.t1
|
Hsc_gene_19903.t1
|
— |
Q09322.2 Coelomocyte uptake defective protein 15 [Caenorhabditis elegans]
|
KAH7723291.1 Protein F42A8.3, partial [Aphelenchus avenae]
|
No
|
0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.956|GO:0005575_0.912|GO:0110165_0.908|GO:0005622_0.815|GO:0005737_0.756|GO:0009987_0.570|GO:0016020_0.567
|
IPR019172+11-266_30-263+
|
— |
PF09777+30-263+Osteopetrosis-associated_transmembrane_protein_1_precursor
|
— |
PTHR15644+11-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.580
|
33836.180
|
5.816
|
-3.000
|
19.454
|
15.358
|
51.536
|
48.464
|
9.898
|
9.556
|
49.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
saddlebrown
|
615.661
|
329.200
|
319.073
|
274.720
|
253.558
|
245.655
|
310.639
|
409.706
|
358.283
|
1621.347
|
1080.034
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.274
|
-0.398
|
— | — | — |
0.346
|
0.636
|
— | — | — | — | — | — |