SCN Proteipedia

Hg_chrom5_TN10mRNA_9441

Organism: Heterodera glycines Gene Locus: chr5:3292847-3302248 Feature type: polypeptide

Protein Sequence

Length: 1,857

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.607	1.152	1.087	0.427	1.346	1.519	0.43	1.077	1.556	1.557	1.11	1.774	1.017	0.476	1.231	1.031	0.68	0.898	1.574	0.729	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8877	—	—	1.444	2.000	1.000	1.000	1.000	2.000	1.000	1.000	2.000	2.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	14-Not_described	0.996

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	nuclear_export_signal	cytoplasm	—	PQKKRNK,KKWIENLDKTLENKMARR	—	—	—	—	—	—	0.000	—	—	0.273	0.219	0.028	0.729	0.105	0.360	0.250	0.065	0.226	0.057

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	—	—	—	—	Hsc_gene_19951.t1	—	Q19020.1 Dynein heavy chain, cytoplasmic [Caenorhabditis elegans]	KAI1727053.1 dynein heavy chain and region d6 of dynein motor domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0005524\|GO:0007018\|GO:0030286\|GO:0045505\|GO:0051959	GO:0008150_0.936\|GO:0005575_0.922\|GO:0110165_0.918\|GO:0009987_0.895\|GO:0005622_0.872\|GO:0043226_0.812\|GO:0043229_0.780\|GO:0016020_0.765\|GO:0005737_0.727\|GO:0071944_0.705\|GO:0043227_0.630\|GO:0043228_0.630\|GO:0043232_0.630\|GO:0005886_0.629\|GO:0003674_0.614\|GO:0051179_0.588\|GO:0007017_0.587\|GO:0071840_0.583\|GO:0005856_0.578\|GO:0016043_0.578\|GO:0051234_0.556\|GO:0006810_0.549\|GO:0032991_0.523\|GO:0006996_0.522\|GO:0051641_0.522\|GO:0007018_0.518\|GO:0015630_0.505	IPR013594+126-697+\|IPR013602+1175-1573+\|IPR026983+807-1831+\|IPR027417+1730-1853_1731-1823+\|IPR035699+1715-1832+\|IPR042222+1328-1477+\|IPR042228+1479-1576+	—	PF08385+126-697+Dynein_heavy_chain,_N-terminal_region_1\|PF08393+1175-1573+Dynein_heavy_chain,_N-terminal_region_2\|PF12774+1715-1832+Hydrolytic_ATP_binding_site_of_dynein_motor_region	G3DSA:1.10.287.2620:FF:000001+1261-1324+Cytoplasmic_dynein_heavy_chain_1\|G3DSA:1.20.140.100:FF:000002+1327-1477+Cytoplasmic_dynein_heavy_chain_1\|G3DSA:1.20.58.1120:FF:000013+1582-1729+Dynein_heavy_chain-like_protein\|G3DSA:3.20.180.20:FF:000002+1479-1577+Cytoplasmic_dynein_heavy_chain_1\|G3DSA:3.40.50.300:FF:000996+1730-1848+Cytoplasmic_dynein_heavy_chain	PTHR46532+807-1831+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-74	1.000	75-1857	6f3a_f	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.497	215941.090	6.806	7.000	29.564	10.339	51.804	48.196	15.509	14.055	40.765

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	skyblue	grey	2076.616	2601.588	1546.063	1220.816	1227.056	1164.525	898.497	499.086	5391.093	1607.763	3229.190

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.980	-1.229	-0.232	—	—	-0.365	-1.330	0.990	1.635	-1.963	—	—	—

No JSON data available for plots.

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