SCN Proteipedia

Hg_chrom5_TN10mRNA_9443

Organism: Heterodera glycines Gene Locus: chr5:3307009-3309832 Feature type: polypeptide

Protein Sequence

Length: 680

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.787	0.992	1.176	0.761	1.005	1.094	0.595	1.176	0.817	1.49	0.891	1.384	1.307	0.735	1.591	1.176	0.747	1.047	1.244	0.606	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8879	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	4-Not_Clustered	0.407

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	KRLVVNRAKRVKMIKK	—	—	—	—	—	—	0.000	—	—	0.621	0.249	0.044	0.508	0.101	0.079	0.055	0.036	0.056	0.017

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0002191	2.000	2.000	Hsc_gene_19899.t1;Hsc_gene_19899.t2	Hsc_gene_2711.t1	—	Q9NAA7.2 26S rRNA (cytosine-C(5))-methyltransferase nsun-5 [Caenorhabditis elegans]	ETN82528.1 methyltransferase domain protein [Necator americanus]	No	-0.230

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0001510\|GO:0008168\|GO:0008173	GO:0008150_0.871\|GO:0009987_0.784\|GO:0003674_0.777\|GO:0005575_0.663\|GO:0008152_0.657\|GO:0110165_0.654\|GO:0044238_0.647\|GO:0044237_0.639\|GO:0009058_0.631\|GO:0003824_0.626\|GO:0043170_0.626\|GO:0044249_0.613\|GO:0009059_0.599\|GO:0005622_0.593\|GO:0006139_0.589\|GO:0010467_0.586\|GO:0016740_0.579\|GO:0034654_0.575\|GO:0090304_0.574\|GO:0141187_0.566\|GO:0016070_0.562\|GO:0032774_0.559\|GO:0043412_0.559\|GO:0140640_0.539\|GO:0140098_0.537\|GO:0008168_0.535\|GO:0008757_0.535\|GO:0016741_0.535\|GO:0006396_0.533\|GO:0008173_0.531\|GO:0001510_0.525\|GO:0009451_0.525\|GO:0032259_0.525\|GO:0043414_0.525\|GO:0016020_0.518	IPR001678+382-678+\|IPR023267+464-478_493-503_562-574_660-677+\|IPR026113+19-307+\|IPR029063+54-307_83-292_390-677_473-680+\|IPR049560+482-675+\|IPR049561+390-473+	—	PF01189+482-675+16S_rRNA_methyltransferase_RsmB/F\|PF13489+108-282+Methyltransferase_domain\|PF21148+390-473+NOL1/NOP2/Sun_domain_family_member_5,_ferredoxin-like_domain	—	PTHR22809+19-307+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-25	1.000	26-680	2b9e_A	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.738	77408.470	8.423	16.000	28.529	10.735	49.853	50.147	16.029	12.500	48.235

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	darkgrey	grey	585.015	809.042	596.804	738.173	701.185	618.418	920.215	994.504	77.162	484.692	310.036

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.669	-0.269	0.416	—	—	0.584	0.582	—	—	3.425	—	—	—

No JSON data available for plots.

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