Hg_chrom5_TN10mRNA_9444
Organism: Heterodera glycines Gene Locus: chr5:3310021-3311884 Feature type: polypeptideProtein Sequence
Length: 413
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.042 | 0.788 | 1.145 | 0.417 | 0.888 | 1.118 | 0.577 | 1.453 | 0.969 | 1.44 | 0.44 | 1.424 | 1.278 | 1.164 | 1.878 | 0.726 | 0.913 | 1.101 | 1.118 | 0.926 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8880
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRRQRHKFSRGTISRLSRR
|
4-55
|
0.725
|
— | — | — | — |
0.000
|
— | — |
0.096
|
0.958
|
0.022
|
0.134
|
0.035
|
0.031
|
0.077
|
0.007
|
0.050
|
0.021
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004051
|
2.000
|
1.000
|
Hsc_gene_19900.t1
|
Hsc_gene_19900.t1
|
— |
P34384.3 Large ribosomal subunit protein mL44 [Caenorhabditis elegans]
|
KAH7724557.1 Protein F02A9.4 b [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004525|GO:0006396
|
— |
IPR000999+90-230+|IPR036389+60-200_68-228+
|
SM00535+90-230+
|
PF22892+235-359+MRPL44_dsRNA-binding_domain|PF22935+70-208+Large_ribosomal_subunit_protein_mL44,_endonuclease_domain
|
— | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-413
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
47078.910
|
8.079
|
8.000
|
26.634
|
12.107
|
45.036
|
54.964
|
15.012
|
11.622
|
48.668
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
879.976
|
982.655
|
713.942
|
979.091
|
1098.556
|
823.477
|
1301.963
|
699.183
|
672.063
|
871.273
|
785.898
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.690
|
-0.142
|
0.564
|
0.134
|
-0.400
|
0.671
|
-0.341
|
1.040
|
— | — | — | — | — |
No JSON data available for plots.