Hg_chrom5_TN10mRNA_9446
Organism: Heterodera glycines Gene Locus: chr5:3314955-3318396 Feature type: polypeptideProtein Sequence
Length: 619
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.92 | 1.052 | 1.204 | 0.167 | 1.185 | 1.533 | 0.558 | 1.05 | 0.718 | 1.004 | 0.563 | 1.235 | 1.436 | 1.181 | 1.846 | 1.362 | 0.874 | 0.906 | 1.367 | 0.333 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8882
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
19-Eggs_Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
PTKKRKK,KRESKEERMMNIQAKKIKR
|
— | — | — | — | — | — |
0.000
|
— | — |
0.853
|
0.078
|
0.006
|
0.398
|
0.079
|
0.097
|
0.064
|
0.038
|
0.021
|
0.022
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0001107
|
3.000
|
2.000
|
Hsc_gene_26073.t1;Hsc_gene_26073.t2
|
— | — |
O94888.2 UBX domain-containing protein 7 [Homo sapiens]
|
KAI1712668.1 thioredoxin-like domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.756|GO:0110165_0.756|GO:0016020_0.684|GO:0005622_0.679|GO:0003674_0.675|GO:0008150_0.669|GO:0005488_0.647|GO:0043226_0.644|GO:0043229_0.616|GO:0005515_0.609|GO:0043227_0.591|GO:0043231_0.559|GO:0005737_0.555
|
IPR001012+535-614+|IPR006577+268-384+|IPR009060+20-59+|IPR029071+533-614+|IPR036249+258-395+|IPR050730+23-615+
|
SM00594+268-384+
|
PF13899+282-364+Thioredoxin-like|PF14555+22-59+UBA-like_domain
|
— |
PTHR23322+23-615+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
62-232;402-501
|
3.000
|
1-61;233-401;502-619
|
2dlx_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.721
|
70184.270
|
6.579
|
0.500
|
28.595
|
10.178
|
53.958
|
46.042
|
14.863
|
13.732
|
51.212
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkgrey
|
grey
|
1711.993
|
2798.750
|
1232.604
|
1239.415
|
1670.937
|
1599.539
|
3215.810
|
1301.707
|
1278.377
|
1634.151
|
1481.677
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.413
|
-1.312
|
0.117
|
0.399
|
— |
1.018
|
-0.403
|
1.448
|
— | — | — | — | — |
No JSON data available for plots.