SCN Proteipedia

Hg_chrom5_TN10mRNA_9448

Organism: Heterodera glycines Gene Locus: chr5:3322517-3326481 Feature type: polypeptide

Protein Sequence

Length: 676

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.998	1.066	0.646	0.561	1.011	1.555	0.475	1.849	1.282	1.839	0.493	0.87	1.027	1.223	1.449	1.099	0.8	0.897	0.569	0.392	0.0

No JSON data available for plots.

Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8884	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	23-Female	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	—	cytoplasm\|nucleus	—	—	—	—	36-58	0.908	—	—	0.000	—	—	0.565	0.244	0.018	0.480	0.097	0.293	0.210	0.032	0.127	0.081

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0004053	2.000	1.000	Hsc_gene_19902.t1	Hsc_gene_19902.t1	—	Q03570.6 Mediator of RNA polymerase II transcription subunit 14 [Caenorhabditis elegans]	KAI1700697.1 mediator complex subunit MED14 domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0003712\|GO:0006357\|GO:0016592	GO:0008150_0.957\|GO:0009987_0.916\|GO:0005575_0.914\|GO:0110165_0.914\|GO:0065007_0.880\|GO:0050789_0.868\|GO:0050794_0.854\|GO:0003674_0.852\|GO:0005622_0.852\|GO:0016020_0.847\|GO:0005488_0.803\|GO:0008152_0.802\|GO:0043226_0.801\|GO:0044238_0.792\|GO:0043170_0.785\|GO:0009058_0.782\|GO:0043229_0.779\|GO:0044237_0.778\|GO:0005515_0.766\|GO:0044249_0.762\|GO:0019222_0.757\|GO:0009059_0.754\|GO:0031323_0.748\|GO:0043227_0.743\|GO:0010467_0.740\|GO:0006139_0.739\|GO:0060255_0.739\|GO:0080090_0.738\|GO:0043231_0.734\|GO:0009889_0.729\|GO:0031326_0.729\|GO:0034654_0.725\|GO:0090304_0.725\|GO:0010556_0.722\|GO:0010468_0.721\|GO:0141187_0.720\|GO:0016070_0.716\|GO:0032774_0.711\|GO:0019219_0.706\|GO:0051252_0.703\|GO:0006351_0.702\|GO:2001141_0.699\|GO:0006355_0.698\|GO:0006357_0.689\|GO:0006366_0.689\|GO:0140110_0.663\|GO:0060090_0.660\|GO:0030674_0.658\|GO:0003712_0.654\|GO:0032991_0.652\|GO:0005634_0.634\|GO:0140513_0.559\|GO:0005667_0.546\|GO:0016592_0.540\|GO:0070847_0.540\|GO:0090575_0.540\|GO:0048518_0.507	IPR013947+64-648_73-260+	—	PF08638+73-260+Mediator_complex_subunit_MED14	—	PTHR12809+64-648+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	1-46;670-676	1.000	47-669	—	—

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.752	75628.040	8.308	17.500	23.669	9.467	46.893	53.107	14.053	9.615	47.189

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	red	turquoise	216.118	194.297	189.434	195.078	254.349	227.720	618.152	266.282	58.143	172.415	123.442

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	-0.267	—	—	0.352	—	1.453	—	1.360	—	—	—	—	—

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