Hg_chrom5_TN10mRNA_9449
Organism: Heterodera glycines Gene Locus: chr5:3326570-3328792 Feature type: polypeptideProtein Sequence
Length: 293
(Signal peptide: 1-18)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.556 | 1.667 | 1.055 | 1.412 | 0.626 | 1.575 | 0.244 | 1.365 | 1.744 | 1.199 | 0.517 | 1.004 | 1.706 | 0.394 | 0.766 | 1.706 | 1.063 | 0.724 | 1.838 | 1.205 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8885
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
4-Not_Clustered
|
0.905
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
lysosome_vacuole
|
— | — | — | — | — | — |
1-18
|
0.990
|
1.000
|
1.000
|
1.000
|
0.229
|
0.050
|
0.048
|
0.279
|
0.318
|
0.807
|
0.528
|
0.073
|
0.544
|
0.067
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004054
|
2.000
|
1.000
|
Hsc_gene_19903.t1
|
Hsc_gene_19903.t1
|
— |
Q09322.2 Coelomocyte uptake defective protein 15 [Caenorhabditis elegans]
|
KAH7723291.1 Protein F42A8.3, partial [Aphelenchus avenae]
|
No
|
0.020
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.957|GO:0005575_0.911|GO:0110165_0.909|GO:0005622_0.809|GO:0005737_0.751|GO:0009987_0.571|GO:0016020_0.569
|
IPR019172+11-266_30-263+
|
— |
PF09777+30-263+Osteopetrosis-associated_transmembrane_protein_1_precursor
|
— |
PTHR15644+11-266+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-293
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.567
|
33820.180
|
5.816
|
-3.000
|
19.454
|
15.358
|
51.195
|
48.805
|
9.898
|
9.556
|
49.147
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
lightgreen
|
318.532
|
286.813
|
238.210
|
204.251
|
188.102
|
168.940
|
209.095
|
301.539
|
52.679
|
755.212
|
454.126
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.497
|
-0.627
|
— | — | — |
0.317
|
0.733
|
-0.388
|
-3.963
|
— | — | — | — |