Hg_chrom5_TN10mRNA_9453
Organism: Heterodera glycines Gene Locus: chr5:3335525-3338087 Feature type: polypeptideProtein Sequence
Length: 549
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.805 | 0.805 | 0.464 | 0.628 | 1.032 | 0.887 | 0.694 | 0.82 | 1.174 | 1.797 | 0.966 | 2.357 | 1.821 | 0.56 | 0.558 | 1.327 | 0.836 | 1.049 | 1.121 | 1.232 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8888
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Eggs_J4_Males
|
0.999
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
transmembrane_domain
|
cell_membrane
|
— |
RKKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.048
|
0.120
|
0.023
|
0.136
|
0.301
|
0.565
|
0.320
|
0.004
|
0.649
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009241
|
1.000
|
1.000
|
Hsc_gene_19906.t1
|
Hsc_gene_19906.t1
|
— |
Q8K4D3.1 Proton-coupled amino acid transporter 1 [Mus musculus]
|
KAI1705117.1 transmembrane amino acid transporter protein domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.877|GO:0005575_0.843|GO:0110165_0.841|GO:0009987_0.802|GO:0016020_0.780|GO:0051179_0.777|GO:0006810_0.769|GO:0051234_0.769|GO:0003674_0.707|GO:0071944_0.662|GO:0055085_0.657|GO:0005886_0.652|GO:0043226_0.621|GO:0005215_0.598|GO:0022857_0.597|GO:0043227_0.592|GO:0005622_0.574|GO:0006865_0.555|GO:0005737_0.550|GO:0003333_0.541|GO:0043229_0.532|GO:0015171_0.521|GO:0005773_0.507|GO:0043231_0.507
|
IPR013057+82-512+
|
— |
PF01490+82-512+Transmembrane_amino_acid_transporter_protein
|
— |
PTHR22950+81-508+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-24
|
1.000
|
25-549
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.695
|
61805.300
|
7.792
|
6.500
|
19.490
|
13.843
|
40.801
|
59.199
|
10.747
|
8.743
|
44.809
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
728.816
|
835.151
|
310.562
|
315.524
|
457.913
|
1956.817
|
466.025
|
1721.252
|
70.342
|
862.098
|
522.774
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.660
|
-1.542
|
— |
0.506
|
2.110
|
-2.060
|
-0.290
|
-1.742
|
— | — | — | — | — |
No JSON data available for plots.