Hg_chrom5_TN10mRNA_9454
Organism: Heterodera glycines Gene Locus: chr5:3338293-3341561 Feature type: polypeptideProtein Sequence
Length: 506
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.483 | 1.057 | 1.078 | 1.022 | 1.416 | 1.368 | 0.753 | 0.791 | 1.098 | 1.095 | 1.108 | 2.441 | 1.702 | 0.57 | 1.049 | 1.016 | 0.972 | 0.838 | 1.52 | 0.407 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8889
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
9-Migratory
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
transmembrane_domain
|
cell_membrane
|
nucleus
|
RKKR
|
— | — | — | — | — |
0.521
|
0.329
|
1.000
|
— |
0.090
|
0.118
|
0.015
|
0.196
|
0.343
|
0.284
|
0.246
|
0.022
|
0.834
|
0.106
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009242
|
1.000
|
1.000
|
Hsc_gene_19907.t1
|
Hsc_gene_19907.t1
|
— | — |
KAH7730932.1 Protein DEL-6 a [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005272|GO:0006814|GO:0016020
|
GO:0008150_0.959|GO:0009987_0.908|GO:0051179_0.790|GO:0006810_0.776|GO:0051234_0.776|GO:0005575_0.661|GO:0110165_0.661|GO:0016020_0.591
|
IPR001873+11-470_46-62_297-450_396-416_416-430_430-446+
|
— |
PF00858+297-450+Amiloride-sensitive_sodium_channel
|
— |
PTHR11690+11-470+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
463-506
|
1.000
|
1-462
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.507
|
58063.230
|
5.450
|
-6.000
|
28.458
|
11.067
|
51.383
|
48.617
|
14.032
|
14.427
|
45.455
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
cyan
|
magenta
|
1081.817
|
135.525
|
4700.129
|
573.371
|
216.806
|
300.051
|
376.604
|
5464.103
|
154.350
|
204.715
|
183.130
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4.887
|
1.943
|
-2.927
|
-1.436
|
0.482
|
0.340
|
4.089
|
-3.717
|
— | — | — | — | — |