Hg_chrom5_TN10mRNA_9458
Organism: Heterodera glycines Gene Locus: chr5:3351990-3355530 Feature type: polypeptideProtein Sequence
Length: 727
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.072 | 0.992 | 1.1 | 0.617 | 0.848 | 1.058 | 0.77 | 1.169 | 1.314 | 1.506 | 0.729 | 0.971 | 1.146 | 0.873 | 0.786 | 1.258 | 0.925 | 1.188 | 1.058 | 0.283 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8893
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.612
|
0.068
|
0.002
|
0.682
|
0.141
|
0.192
|
0.227
|
0.125
|
0.067
|
0.047
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009245
|
1.000
|
1.000
|
Hsc_gene_19910.t1
|
Hsc_gene_19910.t1
|
— |
G5EES6.1 Ubiquitin fusion degradation protein 3 homolog [Caenorhabditis elegans]
|
KAI1728465.1 PFU (PLAA family ubiquitin binding) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.180
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005515
|
GO:0005575_0.861|GO:0110165_0.854|GO:0005622_0.737|GO:0008150_0.731|GO:0016020_0.649|GO:0005737_0.597|GO:0043226_0.563|GO:0009987_0.553|GO:0043229_0.549
|
IPR001680+24-63_30-62_115-154_117-153_122-153_164-205_170-204_171-204_207-245_209-245_214-254_248-293_299-337+|IPR011989+449-722+|IPR013535+443-723_461-680+|IPR015943+21-351+|IPR016024+554-627+|IPR020472+50-64_192-206_232-246+|IPR036322+30-348+
|
SM00320+24-63_115-154_164-205_207-245_248-293_299-337+
|
PF00400+30-62_117-153_170-204_209-245+WD_domain,_G-beta_repeat|PF08324+461-680+PUL_domain
|
— |
PTHR19849+38-387+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-11
|
1.000
|
12-727
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.594
|
78815.050
|
5.493
|
-9.500
|
22.146
|
8.803
|
44.979
|
55.021
|
11.004
|
11.142
|
54.608
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey
|
2024.095
|
2049.694
|
1564.778
|
2223.301
|
2819.684
|
2276.403
|
3311.166
|
1838.271
|
843.729
|
2191.383
|
1613.817
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.619
|
— |
0.616
|
0.311
|
-0.294
|
0.551
|
-0.413
|
0.991
|
-1.498
|
— | — | — | — |
No JSON data available for plots.