Hg_chrom5_TN10mRNA_9459
Organism: Heterodera glycines Gene Locus: chr5:3356322-3357670 Feature type: polypeptideProtein Sequence
Length: 257
(Signal peptide: 1-29)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.086 | 1.448 | 1.061 | 0.805 | 0.843 | 0.898 | 0.602 | 0.389 | 1.297 | 1.209 | 1.061 | 0.687 | 1.946 | 0.599 | 0.715 | 1.556 | 0.765 | 0.943 | 0.599 | 0.801 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8894
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
23-Female
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
cell_membrane|lysosome_vacuole
|
chloroplast
|
KKWNITLEFTKKDGK
|
— | — |
33-70
|
0.845
|
1-29
|
0.961
|
1.000
|
1.000
|
1.000
|
0.062
|
0.028
|
0.007
|
0.176
|
0.223
|
0.757
|
0.222
|
0.099
|
0.923
|
0.217
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009246
|
1.000
|
1.000
|
Hsc_gene_19911.t1
|
Hsc_gene_19911.t1
|
— |
Q11117.1 LAMP family protein lmp-1 [Caenorhabditis elegans]
|
KAI6191938.1 LAMP family protein lmp-1 [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016020
|
GO:0005575_0.947|GO:0110165_0.943|GO:0016020_0.902|GO:0005622_0.817|GO:0071944_0.810|GO:0005737_0.802|GO:0005886_0.798|GO:0043226_0.796|GO:0043229_0.779|GO:0043227_0.765|GO:0043231_0.747|GO:0005773_0.733|GO:0031090_0.583|GO:0000323_0.565|GO:0005764_0.553|GO:0012505_0.537|GO:0098588_0.534
|
IPR002000+1-257_31-256+|IPR048524+223-254+
|
— |
PF21222+223-254+Lysosome-associated_membrane_glycoprotein_2,_transmembrane_segment
|
— |
PTHR11506+31-256+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-257
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.766
|
28327.160
|
6.463
|
0.000
|
22.179
|
11.284
|
47.471
|
52.529
|
11.284
|
10.895
|
53.696
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
red
|
grey
|
3302.765
|
2298.936
|
3053.626
|
2680.947
|
2835.637
|
2903.417
|
5873.434
|
3132.563
|
3879.013
|
2998.380
|
3375.794
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.180
|
0.085
|
— | — | — |
1.026
|
— |
1.048
|
— | — | — | — | — |