Hg_chrom5_TN10mRNA_9461
Organism: Heterodera glycines Gene Locus: chr5:3361568-3363283 Feature type: polypeptideProtein Sequence
Length: 402
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.868 | 0.752 | 1.131 | 0.172 | 1.617 | 1.148 | 1.096 | 0.622 | 0.884 | 1.345 | 1.395 | 1.317 | 0.691 | 0.383 | 1.929 | 1.528 | 0.652 | 0.49 | 0.383 | 0.073 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8896
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
14-Not_described
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRQK,RHRR,KRRRR,RRKKSGQREVNEKRRRGA,KKQRKRGNTKRDAIPKKGAKRRKGGE
|
78-98
|
0.968
|
— | — | — | — |
0.000
|
— | — |
0.918
|
0.092
|
0.007
|
0.140
|
0.012
|
0.007
|
0.044
|
0.004
|
0.024
|
0.027
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009248
|
1.000
|
1.000
|
Hsc_gene_19915.t1
|
Hsc_gene_19915.t1
|
— | — |
KHN78291.1 RRP12-like protein [Toxocara canis]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
165-402
|
1.000
|
1-164
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.899
|
44486.000
|
10.191
|
13.500
|
35.821
|
4.478
|
58.209
|
41.791
|
19.900
|
15.920
|
46.517
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
orange
|
1761.478
|
2204.076
|
1680.723
|
1714.726
|
1719.092
|
1317.662
|
2111.564
|
921.562
|
2513.927
|
1444.995
|
1903.109
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.622
|
-0.499
|
0.139
|
— |
-0.369
|
0.692
|
-0.621
|
1.340
|
— | — | — | — | — |
No JSON data available for plots.