Hg_chrom5_TN10mRNA_9466
Organism: Heterodera glycines Gene Locus: chr5:3370287-3374873 Feature type: polypeptideProtein Sequence
Length: 922
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.731 | 1.236 | 1.065 | 0.898 | 1.934 | 1.279 | 0.981 | 2.169 | 0.603 | 0.938 | 0.937 | 1.978 | 1.085 | 0.667 | 1.527 | 0.961 | 0.551 | 0.608 | 0.417 | 0.606 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8899
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-J3_Female
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KRRS,RKRRRP,RRTVRNRPGPMTSKKRVL
|
— | — | — | — | — | — |
0.000
|
— | — |
0.933
|
0.043
|
0.038
|
0.158
|
0.026
|
0.014
|
0.012
|
0.028
|
0.066
|
0.037
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004056
|
2.000
|
1.000
|
Hsc_gene_19919.t1
|
Hsc_gene_19919.t1
|
— | — |
KAI1713375.1 Zinc finger, C2H2 type family protein [Ditylenchus destructor]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR013087+119-142_119-147_148-170_338-359_368-393_520-543_702-722_729-752_729-757+|IPR036236+119-170+|IPR050688+119-699+
|
SM00355+119-142_148-170_338-359_368-393_520-543_702-722_729-752+
|
— | — |
PTHR24403+119-699+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
200-422;589-672;796-922
|
3.000
|
1-199;423-588;673-795
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.508
|
104812.280
|
5.854
|
-15.000
|
35.466
|
10.846
|
55.857
|
44.143
|
18.004
|
17.462
|
45.879
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
brown
|
366.580
|
249.335
|
387.688
|
601.987
|
545.762
|
571.820
|
1417.954
|
225.070
|
17.968
|
90.455
|
59.389
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.403
|
1.134
|
0.747
|
-0.173
|
— |
1.321
|
-1.457
|
2.801
|
— |
5.252
|
3.474
|
— | — |
No JSON data available for plots.