Hg_chrom5_TN10mRNA_9470
Organism: Heterodera glycines Gene Locus: chr5:3385603-3389386 Feature type: polypeptideProtein Sequence
Length: 1,175
(Signal peptide: 1-22)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.019 | 1.306 | 0.17 | 0.059 | 2.057 | 1.637 | 0.172 | 0.553 | 0.548 | 1.058 | 1.483 | 1.752 | 0.355 | 0.098 | 1.424 | 3.526 | 0.46 | 0.542 | 0.065 | 0.075 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8903
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
15-Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
cytoplasm
|
chloroplast
|
RKRK,RKLKEQMEEQLKKQRE,RKQAELEEMERRKKQA,RRIRAENIAAELKKRQS,KRAKEHKQRLELKMKRL,KKKVQAEEEARLERQRVK,KKQRETEERTRRELEERKR,RKEEAAKTEAEEAAKTQKR,KLKREVEKRAKEHKQRLELKMKR
|
— | — |
4-41
|
0.932
|
1-22
|
0.956
|
0.999
|
0.000
|
0.000
|
0.171
|
0.202
|
0.026
|
0.626
|
0.161
|
0.095
|
0.165
|
0.066
|
0.279
|
0.209
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009252
|
1.000
|
1.000
|
Hsc_gene_19923.t1
|
— | — | — | — |
MCD8086538
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-989;1161-1175
|
1.000
|
990-1160
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.973
|
129476.730
|
10.445
|
47.500
|
31.149
|
2.723
|
70.638
|
29.362
|
17.872
|
13.277
|
48.511
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
royalblue
|
3977.650
|
5.387
|
16.582
|
18.647
|
7.391
|
1595.592
|
7.113
|
44028.345
|
0.000
|
272.572
|
155.756
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
1.387
|
1.657
|
— |
-1.371
|
7.771
|
-7.797
|
4.687
|
-12.456
|
-8.888
|
5.078
|
— | — | — |