Hg_chrom5_TN10mRNA_9472
Organism: Heterodera glycines Gene Locus: chr5:3392877-3410980 Feature type: polypeptideProtein Sequence
Length: 4,218
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.092 | 0.943 | 0.858 | 0.474 | 1.308 | 1.653 | 0.632 | 1.019 | 0.859 | 1.807 | 0.754 | 1.241 | 1.225 | 0.684 | 1.369 | 0.989 | 0.692 | 0.869 | 1.149 | 0.425 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8905
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
10-Pre_planta
|
0.990
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm
|
— |
KKAAKK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.175
|
0.179
|
0.027
|
0.687
|
0.138
|
0.183
|
0.116
|
0.005
|
0.355
|
0.080
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009254
|
1.000
|
1.000
|
Hsc_gene_19926.t1
|
Hsc_gene_19925.t1;Hsc_gene_19926.t1
|
— |
Q19542.2 Cytoplasmic dynein 2 heavy chain 1 [Caenorhabditis elegans]
|
KAI1718189.1 dynein heavy chain and region d6 of dynein motor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0005524|GO:0007018|GO:0008569|GO:0016887|GO:0030286|GO:0045505|GO:0051959
|
GO:0008150_0.923|GO:0005575_0.921|GO:0110165_0.917|GO:0009987_0.888|GO:0005622_0.864|GO:0016020_0.832|GO:0043226_0.804|GO:0071944_0.759|GO:0005886_0.743|GO:0043229_0.733|GO:0043227_0.718|GO:0005737_0.688|GO:0032991_0.644|GO:0051179_0.626|GO:0016043_0.618|GO:0071840_0.618|GO:0043228_0.608|GO:0043232_0.608|GO:0051234_0.592|GO:0007017_0.590|GO:0006810_0.586|GO:0098590_0.585|GO:0005856_0.582|GO:0042995_0.581|GO:0120025_0.579|GO:0007018_0.560|GO:0006996_0.555|GO:0051641_0.542|GO:0051649_0.509|GO:0015630_0.508|GO:0003674_0.503
|
IPR003593+1630-1726_1904-2060+|IPR004273+3591-3707+|IPR013594+167-628+|IPR013602+1103-1471+|IPR024317+2530-2738+|IPR024743+2787-3118+|IPR026983+98-4213+|IPR027417+1612-1764_1613-1813_1870-2145_1893-2056_2239-2709_2544-2729_3133-3305_3576-3710+|IPR035699+1597-1919+|IPR035706+3144-3364+|IPR041228+3995-4212+|IPR041658+3745-3885+|IPR042219+3711-3883+|IPR042222+1242-1320_1321-1390+|IPR042228+1391-1474+|IPR043157+1765-1866+|IPR043160+4076-4215+|IPR049400+2055-2147+|IPR054354+2372-2462+
|
SM00382+1630-1726_1904-2060+
|
PF03028+3591-3707+Dynein_heavy_chain_region_D6_P-loop_domain|PF08385+167-628+Dynein_heavy_chain,_N-terminal_region_1|PF08393+1103-1471+Dynein_heavy_chain,_N-terminal_region_2|PF12774+1597-1919+Hydrolytic_ATP_binding_site_of_dynein_motor_region|PF12775+2237-2357+P-loop_containing_dynein_motor_region|PF12777+2787-3118+Microtubule-binding_stalk_of_dynein_motor|PF12780+2530-2738+P-loop_containing_dynein_motor_region_D4|PF12781+3144-3364+ATP-binding_dynein_motor_region|PF18198+3745-3885+Dynein_heavy_chain_AAA_lid_domain|PF18199+3995-4212+Dynein_heavy_chain_C-terminal_domain|PF21264+2055-2147+Cytoplasmic_dynein_2_heavy_chain_1,_AAA+_ATPase_domain|PF22597+2372-2462+Dynein_heavy_chain,_ATPase_lid_domain
|
G3DSA:1.20.920.20:FF:000002+2760-3101+Cytoplasmic_dynein_1_heavy_chain|G3DSA:3.20.180.20:FF:000002+1391-1474+Cytoplasmic_dynein_heavy_chain_1|G3DSA:3.40.50.300:FF:000071+1612-1765+Cytoplasmic_dynein_heavy_chain_1
|
PTHR10676+98-4213+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-18;114-175;2817-2870
|
3.000
|
19-113;176-2816;2871-4218
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.549
|
474825.990
|
6.631
|
6.000
|
26.292
|
9.388
|
47.937
|
52.063
|
13.727
|
12.565
|
45.282
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
greenyellow
|
1711.956
|
2007.444
|
2413.203
|
761.803
|
300.096
|
239.737
|
341.489
|
473.956
|
173.118
|
4908.319
|
2878.947
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-1.535
|
-1.555
|
-1.375
|
-0.310
|
0.522
|
0.878
|
-0.329
|
-4.933
|
— |
-3.665
|
— | — |
No JSON data available for plots.