Hg_chrom5_TN10mRNA_9474
Organism: Heterodera glycines Gene Locus: chr5:3415204-3415855 Feature type: polypeptideProtein Sequence
Length: 83
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.821 | 0.841 | 0.876 | 0.0 | 1.205 | 1.545 | 0.43 | 0.0 | 0.535 | 0.326 | 2.373 | 4.252 | 0.335 | 0.927 | 1.475 | 0.688 | 0.395 | 0.548 | 2.78 | 1.063 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8907
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
8-Not_Clustered
|
0.831
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
nucleus
|
— |
KKRYEQEMTQYRARQK,KRAQSAYFIWMLANREKIK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.881
|
0.196
|
0.033
|
0.304
|
0.023
|
0.044
|
0.070
|
0.003
|
0.083
|
0.222
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009256
|
1.000
|
1.000
|
Hsc_gene_19928.t1
|
Hsc_gene_19928.t1;Hsc_gene_19928.t2
|
— |
P40621.1 HMG1/2-like protein [Triticum aestivum]
|
KAF7637022.1 HMG box domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0008150_0.773|GO:0005575_0.758|GO:0110165_0.745|GO:0003674_0.733|GO:0005488_0.733|GO:0009987_0.716|GO:0005622_0.674|GO:0043226_0.582|GO:0043229_0.579|GO:0097159_0.547|GO:0003676_0.541|GO:0065007_0.533|GO:0016020_0.530|GO:0050789_0.512
|
IPR009071+12-80_13-79+|IPR036910+1-83_4-82+|IPR050342+3-73+
|
SM00398+12-80+
|
PF00505+13-79+HMG_(high_mobility_group)_box
|
— |
PTHR48112+3-73+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
full
|
1-83
|
0.000
|
— |
6upl_H
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.807
|
9606.120
|
10.672
|
9.000
|
34.940
|
8.434
|
51.807
|
48.193
|
22.892
|
12.048
|
43.373
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
9615.093
|
14718.427
|
6049.358
|
6886.949
|
8559.242
|
9827.265
|
5557.815
|
13061.083
|
9864.442
|
10420.147
|
10181.988
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.512
|
-1.233
|
0.296
|
0.282
|
0.214
|
-0.812
|
— |
-1.091
|
— | — | — | — | — |
No JSON data available for plots.