Hg_chrom5_TN10mRNA_9478
Organism: Heterodera glycines Gene Locus: chr5:3431134-3433315 Feature type: polypeptideProtein Sequence
Length: 425
(Signal peptide: 1-27)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.657 | 1.04 | 1.027 | 1.217 | 1.569 | 1.146 | 1.036 | 0.941 | 0.993 | 1.113 | 1.212 | 1.107 | 1.569 | 0.679 | 0.96 | 1.008 | 0.694 | 0.749 | 1.448 | 0.484 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8911
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
22-J4_Male
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
nucleus
|
RKFRVKNAMESAFCKKKCA
|
— | — | — | — |
1-27
|
0.856
|
1.000
|
0.000
|
0.000
|
0.170
|
0.384
|
0.043
|
0.273
|
0.241
|
0.079
|
0.140
|
0.009
|
0.147
|
0.851
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009259
|
1.000
|
1.000
|
Hsc_gene_19931.t1
|
Hsc_gene_19931.t1;Hsc_gene_19932.t1
|
— |
O01887.3 Trypsin-like protease try-5 [Caenorhabditis elegans]
|
KAF7638182.1 Peptidase S1 domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004252|GO:0006508
|
GO:0008150_0.821|GO:0005575_0.752|GO:0110165_0.749|GO:0003674_0.619|GO:0009987_0.568|GO:0050896_0.566|GO:0065007_0.525
|
IPR001254+79-390_80-131_80-395_261-365+|IPR001314+110-125_329-341+|IPR009003+74-396+|IPR018114+120-125+|IPR043504+72-394+|IPR051487+76-392+
|
SM00020+79-390+
|
PF00089+80-131_261-365+Trypsin
|
— |
PTHR24256+76-392+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
388-425
|
1.000
|
1-387
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.591
|
47785.010
|
5.407
|
-6.000
|
29.647
|
11.059
|
49.882
|
50.118
|
14.588
|
15.059
|
47.765
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
turquoise
|
grey
|
557.718
|
65.448
|
72.540
|
51.818
|
142.424
|
415.419
|
84.474
|
466.976
|
113.991
|
1867.363
|
1115.918
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
-0.474
|
-0.374
|
1.429
|
1.556
|
-2.287
|
— |
-2.325
|
— | — | — | — | — |