Hg_chrom5_TN10mRNA_9479
Organism: Heterodera glycines Gene Locus: chr5:3435246-3436294 Feature type: polypeptideProtein Sequence
Length: 297
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.783 | 0.626 | 0.429 | 1.161 | 0.449 | 2.245 | 2.726 | 0.337 | 0.524 | 0.41 | 0.357 | 0.594 | 0.561 | 3.885 | 0.618 | 1.058 | 0.386 | 0.561 | 0.259 | 0.594 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8912
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
29-J3_J4_Female_Male
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
cell_membrane
|
— | — |
6-28
|
0.971
|
62-82
|
0.934
|
— | — |
0.000
|
— | — |
0.038
|
0.058
|
0.006
|
0.122
|
0.381
|
0.228
|
0.319
|
0.005
|
0.647
|
0.206
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009260
|
1.000
|
1.000
|
Hsc_gene_19933.t1
|
Hsc_gene_16823.t1;Hsc_gene_18520.t1;Hsc_gene_19933.t1;Hsc_gene_25248.t1;Hsc_gene_25248.t2;Hsc_gene_6621.t1
|
F23H12.4b
|
P34687.2 Cuticle collagen 34 [Caenorhabditis elegans]
|
KAH7725483.1 Nematode cuticle collagen [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0042302
|
GO:0008150_0.941|GO:0032501_0.880|GO:0032502_0.877|GO:0048856_0.877|GO:0007275_0.848|GO:0005575_0.787|GO:0110165_0.781|GO:0040002_0.670|GO:0042335_0.670|GO:0030312_0.648|GO:0071944_0.648|GO:0031012_0.616|GO:0062023_0.616
|
IPR002486+12-64_15-64+|IPR008160+148-204_216-274+|IPR050632+18-280+
|
SM01088+12-64+
|
PF01391+148-204_216-274+Collagen_triple_helix_repeat_(20_copies)|PF01484+15-64+Nematode_cuticle_collagen_N-terminal_domain
|
— |
PTHR24637+18-280+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
88-297
|
1.000
|
1-87
|
9han_E
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.791
|
28803.840
|
7.414
|
2.000
|
11.111
|
5.051
|
32.323
|
67.677
|
6.061
|
5.051
|
71.717
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
darkred
|
95814.675
|
86.744
|
137.192
|
85111.963
|
324990.779
|
451893.066
|
117093.945
|
24106.560
|
57.358
|
42863.592
|
24518.063
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.434
|
9.801
|
9.383
|
1.901
|
0.490
|
-1.940
|
-4.350
|
2.428
|
-9.678
|
10.703
|
3.136
|
— | — |
No JSON data available for plots.