Hg_chrom5_TN10mRNA_9480
Organism: Heterodera glycines Gene Locus: chr5:3440278-3444411 Feature type: polypeptideProtein Sequence
Length: 874
(Signal peptide: 1-16)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.639 | 1.038 | 0.811 | 0.197 | 2.46 | 0.909 | 0.858 | 0.858 | 0.941 | 0.881 | 1.664 | 2.086 | 0.858 | 0.792 | 1.261 | 0.556 | 0.825 | 0.936 | 1.496 | 0.606 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8913
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — | — | — |
17-ppJ2_pJ2
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
nuclear_localization_signal
|
nucleus
|
nucleus
|
LGEV,RKETVAQFEWPNKKEKRGR,VRRKTNRAKTVPKGGKAMPKMGVKNGRKTK
|
— | — | — | — |
1-16
|
0.927
|
0.875
|
0.000
|
0.000
|
0.622
|
0.147
|
0.009
|
0.420
|
0.069
|
0.066
|
0.081
|
0.002
|
0.173
|
0.440
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004057
|
1.000
|
2.000
|
Hsc_gene_19934.t1;Hsc_gene_19934.t2
|
Hsc_gene_19934.t1;Hsc_gene_19934.t2
|
— | — |
KAI3420120.1 Calcium-dependent protein kinase 4, variant 2 [Globodera pallida]
|
HLT40239
|
0.100
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0004672|GO:0005524|GO:0006468
|
— |
IPR000719+198-558_306-545+|IPR011009+256-558+
|
SM00220+198-558+
|
PF00069+306-545+Protein_kinase_domain
|
— |
PTHR44167+58-552+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-157;603-874
|
1.000
|
158-602
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.539
|
100941.330
|
5.602
|
-10.500
|
38.101
|
8.810
|
55.034
|
44.966
|
18.879
|
19.222
|
41.419
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
green
|
1239.982
|
7.908
|
532.293
|
349.777
|
93.251
|
27.614
|
25.556
|
30.024
|
5922.049
|
583.474
|
2871.434
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
5.848
|
5.334
|
-0.497
|
-1.940
|
-1.741
|
— | — | — |
3.215
|
-3.915
|
— | — | — |