Hg_chrom5_TN10mRNA_9484
Organism: Heterodera glycines Gene Locus: chr5:3449730-3450548 Feature type: polypeptideProtein Sequence
Length: 240
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.502 | 0.872 | 0.909 | 0.431 | 0.903 | 0.855 | 1.339 | 0.833 | 1.667 | 0.901 | 0.884 | 1.716 | 0.926 | 0.24 | 1.105 | 0.655 | 0.956 | 1.515 | 0.321 | 0.49 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8917
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-Not_Clustered
|
0.662
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
extracellular
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.313
|
0.395
|
0.224
|
0.398
|
0.038
|
0.087
|
0.097
|
0.202
|
0.145
|
0.743
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009264
|
1.000
|
1.000
|
Hsc_gene_19938.t1
|
Hsc_gene_19938.t1
|
— |
Q59787.1 Sorbitol dehydrogenase [Cereibacter sphaeroides]
|
WP_275020721.1 L-iditol 2-dehydrogenase [Ensifer adhaerens];WDZ75708.1 L-iditol 2-dehydrogenase [Ensifer adhaerens]
|
WP_258159516
|
inf
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016491
|
GO:0003674_0.802|GO:0008150_0.748|GO:0003824_0.719|GO:0016491_0.627|GO:0008152_0.588|GO:0016614_0.569|GO:0016616_0.569
|
IPR002347+8-196_9-26_80-91_128-144_134-142_154-173_175-192+|IPR020904+141-169+|IPR036291+6-237+
|
SM00822+8-185+
|
PF00106+8-196+short_chain_dehydrogenase
|
G3DSA:3.40.50.720:FF:000084+1-233+Short-chain_dehydrogenase_reductase
|
PTHR42760+5-229+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-240
|
1k2w_B
|
STRUCT_HOMOLOG
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.703
|
25382.220
|
8.271
|
4.000
|
23.333
|
7.083
|
40.833
|
59.167
|
12.917
|
10.417
|
55.833
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
magenta
|
179.019
|
281.884
|
119.301
|
30.013
|
429.938
|
350.584
|
132.696
|
25.359
|
7.904
|
263.617
|
154.025
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.471
|
-3.370
|
-1.883
|
3.812
|
— |
-1.388
|
-3.895
|
2.531
|
-5.207
|
— | — | — | — |
No JSON data available for plots.