Hg_chrom5_TN10mRNA_9486
Organism: Heterodera glycines Gene Locus: chr5:3451010-3452720 Feature type: polypeptideProtein Sequence
Length: 302
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.809 | 1.232 | 0.06 | 1.37 | 0.055 | 1.698 | 1.695 | 0.166 | 0.883 | 1.342 | 0.1 | 0.974 | 1.84 | 1.847 | 0.473 | 2.081 | 0.814 | 0.803 | 0.509 | 0.487 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8918
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Egg
|
0.998
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
signal_peptide
|
extracellular
|
chloroplast
|
KRRRR
|
4-24
|
0.972
|
46-69
|
0.960
|
— |
0.853
|
0.489
|
0.000
|
— |
0.297
|
0.351
|
0.024
|
0.096
|
0.118
|
0.028
|
0.067
|
0.077
|
0.055
|
0.971
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0002192
|
2.000
|
2.000
|
Hsc_gene_19939.t1;Hsc_gene_19939.t2
|
Hsc_gene_19939.t1
|
— | — |
PIO72699.1 sushi domain protein [Teladorsagia circumcincta]
|
No
|
-0.170
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — | — |
IPR000436+61-120_152-212_232-284_232-293_245-285+|IPR035976+77-114_170-212_236-293+|IPR051503+171-283+
|
SM00032+61-120_152-212_232-293+
|
PF00084+245-285+Sushi_repeat_(SCR_repeat)
|
— |
PTHR45785+171-283+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-302
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.912
|
30611.870
|
8.496
|
7.500
|
3.974
|
9.272
|
35.430
|
64.570
|
3.311
|
0.662
|
65.232
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
brown
|
134.388
|
1292.031
|
122.442
|
41.287
|
34.968
|
6.455
|
7.303
|
60.778
|
0.000
|
0.976
|
0.558
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.627
|
-5.106
|
-1.461
|
— |
-2.424
|
— |
3.134
|
-2.915
|
— |
6.224
|
— | — | — |