Hg_chrom5_TN10mRNA_9490
Organism: Heterodera glycines Gene Locus: chr5:3463780-3467756 Feature type: polypeptideProtein Sequence
Length: 851
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.888 | 1.066 | 0.791 | 0.567 | 0.529 | 0.663 | 0.574 | 1.763 | 1.018 | 2.064 | 0.356 | 0.968 | 3.166 | 0.814 | 1.055 | 1.326 | 0.693 | 0.926 | 1.175 | 0.553 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8922
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
12-Not_Clustered
|
0.959
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— |
RRIVFSVDGVRRRFDK
|
— | — | — | — | — | — |
0.000
|
— | — |
0.227
|
0.075
|
0.010
|
0.213
|
0.855
|
0.300
|
0.598
|
0.024
|
0.187
|
0.040
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009267
|
1.000
|
1.000
|
Hsc_gene_19944.t1
|
Hsc_gene_19944.t1
|
— |
Q765A7.1 GPI inositol-deacylase [Rattus norvegicus]
|
KAH7697930.1 GPI inositol-deacylase-like protein, partial [Aphelenchus avenae]
|
No
|
-0.080
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0016788
|
GO:0008150_0.971|GO:0009987_0.803|GO:0005575_0.765|GO:0110165_0.765|GO:0016020_0.762|GO:0005886_0.752|GO:0071944_0.752|GO:0005622_0.645|GO:0005737_0.645|GO:0005773_0.645|GO:0043226_0.645|GO:0043227_0.645|GO:0043229_0.645|GO:0043231_0.645|GO:0003674_0.640|GO:0008152_0.627|GO:0012505_0.612|GO:0044238_0.606|GO:0044237_0.602|GO:0005783_0.542
|
IPR012908+76-300+|IPR029058+79-293_80-300+|IPR039529+6-301+
|
— |
PF07819+76-300+PGAP1-like_protein
|
— |
PTHR15495+6-301+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-851
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.718
|
96422.900
|
7.604
|
15.000
|
18.566
|
18.331
|
39.248
|
60.752
|
11.046
|
7.521
|
46.886
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
brown
|
grey
|
455.117
|
503.973
|
689.847
|
522.053
|
415.762
|
497.116
|
759.926
|
515.298
|
444.916
|
193.458
|
301.226
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.223
|
— |
-0.293
|
-0.360
|
0.272
|
0.620
|
— |
0.701
|
— | — | — | — | — |
No JSON data available for plots.