Hg_chrom5_TN10mRNA_9491
Organism: Heterodera glycines Gene Locus: chr5:3467926-3471860 Feature type: polypeptideProtein Sequence
Length: 805
(Signal peptide: 1-20)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.766 | 1.184 | 0.881 | 0.3 | 1.014 | 1.147 | 0.71 | 1.366 | 1.38 | 1.46 | 0.508 | 0.95 | 1.725 | 0.956 | 1.09 | 1.224 | 0.835 | 1.054 | 1.529 | 0.658 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8923
|
— | — |
0.889
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
11-Not_Clustered
|
0.949
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
membrane_bound
|
signal_peptide|transmembrane_domain
|
endoplasmic_reticulum
|
— | — | — | — | — | — |
1-20
|
0.959
|
1.000
|
1.000
|
1.000
|
0.154
|
0.083
|
0.051
|
0.155
|
0.722
|
0.380
|
0.467
|
0.020
|
0.147
|
0.041
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009268
|
1.000
|
1.000
|
Hsc_gene_19945.t1
|
Hsc_gene_19945.t1
|
— |
Q5ZL00.1 ER membrane protein complex subunit 1 [Gallus gallus]
|
KAF7637957.1 EMC1_C domain-containing protein [Meloidogyne graminicola]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0072546
|
GO:0005575_0.927|GO:0110165_0.922|GO:0016020_0.867|GO:0071944_0.842|GO:0005886_0.824|GO:0005622_0.803|GO:0005737_0.780|GO:0043226_0.775|GO:0043229_0.753|GO:0043227_0.738|GO:0043231_0.731|GO:0005773_0.687|GO:0012505_0.668|GO:0005783_0.585
|
IPR011678+587-804+|IPR026895+152-804+
|
— |
PF07774+587-804+ER_membrane_protein_complex_subunit_1,_C-terminal
|
— |
PTHR21573+152-804+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-805
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.630
|
90619.150
|
5.963
|
-7.000
|
22.360
|
13.168
|
45.590
|
54.410
|
11.429
|
10.932
|
48.944
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
skyblue
|
grey60
|
1590.724
|
1879.879
|
1731.133
|
1737.783
|
1916.724
|
2024.268
|
2195.957
|
1516.443
|
1038.754
|
1304.534
|
1190.628
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-0.348
|
-0.250
|
0.114
|
0.110
|
— | — |
-0.521
|
0.676
|
— | — | — | — | — |