Hg_chrom5_TN10mRNA_9495
Organism: Heterodera glycines Gene Locus: chr5:3487036-3488061 Feature type: polypeptideProtein Sequence
Length: 190
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.918 | 1.591 | 0.383 | 1.633 | 1.491 | 1.619 | 0.564 | 1.316 | 0.819 | 0.64 | 0.877 | 2.167 | 0.585 | 0.405 | 2.47 | 0.977 | 1.381 | 0.558 | 1.215 | 0.31 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8927
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
26-J3_J4
|
0.992
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm
|
— | — |
68-88
|
0.996
|
— | — | — | — |
0.000
|
— | — |
0.212
|
0.480
|
0.035
|
0.692
|
0.079
|
0.042
|
0.141
|
0.022
|
0.089
|
0.079
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004059
|
2.000
|
1.000
|
Hsc_gene_18257.t1
|
— | — |
Q9Y496.4 Kinesin-like protein KIF3A [Homo sapiens]
|
KAI1717077.1 kinesin motor domain-containing protein [Ditylenchus destructor]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0003777|GO:0005524|GO:0007018|GO:0008017
|
GO:0005575_0.876|GO:0110165_0.868|GO:0008150_0.836|GO:0005622_0.818|GO:0009987_0.785|GO:0043226_0.688|GO:0016020_0.662|GO:0043229_0.632|GO:0005737_0.615|GO:0071840_0.606|GO:0016043_0.598|GO:0003674_0.568|GO:0043227_0.558|GO:0006996_0.528|GO:0043228_0.528|GO:0043232_0.525
|
IPR001752+1-88_6-85+|IPR027417+5-86+|IPR027640+7-88+|IPR036961+2-94+
|
— |
PF00225+6-85+Kinesin_motor_domain
|
— |
PTHR47969+7-88+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-20;140-190
|
1.000
|
21-139
|
3b6u_B
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.578
|
21924.770
|
10.155
|
15.500
|
31.579
|
7.368
|
60.000
|
40.000
|
20.526
|
11.053
|
47.368
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
grey
|
116.964
|
36.455
|
48.171
|
29.470
|
48.792
|
96.210
|
35.051
|
36.745
|
48.395
|
351.336
|
221.504
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — |
-0.600
|
0.695
|
0.995
|
-1.448
|
-1.497
|
— | — | — | — | — | — |
No JSON data available for plots.