Hg_chrom5_TN10mRNA_9498
Organism: Heterodera glycines Gene Locus: chr5:3512785-3514438 Feature type: polypeptideProtein Sequence
Length: 378
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 1.046 | 1.107 | 1.154 | 0.274 | 0.75 | 2.781 | 0.63 | 1.852 | 1.235 | 1.001 | 0.962 | 1.712 | 0.882 | 1.272 | 0.594 | 1.02 | 0.737 | 0.641 | 0.407 | 1.012 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8930
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
16-Females_and_Males
|
1.000
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
— |
cytoplasm|lysosome_vacuole
|
— | — | — | — | — | — | — | — |
0.001
|
— | — |
0.291
|
0.187
|
0.002
|
0.692
|
0.250
|
0.624
|
0.325
|
0.045
|
0.084
|
0.039
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0004060
|
2.000
|
1.000
|
Hsc_gene_19949.t1
|
Hsc_gene_19949.t1
|
— |
Q32L63.1 Vacuolar protein sorting-associated protein VTA1 homolog [Bos taurus]
|
KAH7728920.1 RhoGAP domain containing protein [Aphelenchus avenae]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0032511
|
GO:0005575_0.925|GO:0110165_0.918|GO:0005622_0.871|GO:0005737_0.779|GO:0008150_0.671|GO:0009987_0.627|GO:0016020_0.608|GO:0043226_0.595|GO:0043229_0.566|GO:0043227_0.537|GO:0043231_0.526
|
IPR023175+4-165+|IPR039431+20-161+|IPR041212+341-373+|IPR044538+12-375+
|
— |
PF04652+20-161+Vta1_like|PF18097+341-373+Vta1_C-terminal_domain
|
— |
PTHR46009+12-375+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-7;150-378
|
1.000
|
8-149
|
2lxm_A
|
PARTIAL_DOMAIN
|
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.647
|
42195.380
|
6.617
|
1.000
|
23.810
|
10.847
|
51.058
|
48.942
|
12.963
|
10.847
|
48.677
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
darkred
|
yellow
|
1667.685
|
1228.117
|
1425.567
|
1312.776
|
1429.217
|
1352.145
|
1666.128
|
1969.045
|
2409.613
|
1595.288
|
1944.284
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — |
0.312
|
0.437
|
— | — | — | — | — | — |
No JSON data available for plots.