Hg_chrom5_TN10mRNA_9500
Organism: Heterodera glycines Gene Locus: chr5:3514494-3517993 Feature type: polypeptideProtein Sequence
Length: 498
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.747 | 0.934 | 1.205 | 0.623 | 0.87 | 1.03 | 0.717 | 1.305 | 1.249 | 1.492 | 0.639 | 1.181 | 1.283 | 0.927 | 1.188 | 1.09 | 0.889 | 1.095 | 0.927 | 1.063 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8931
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
1.000
|
1.000
|
— |
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
24-Not_Clustered
|
0.921
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
mitochondrial_transit_peptide
|
mitochondrion
|
— |
RRNSTAKVVPKKVLR
|
31-82
|
0.835
|
1-42
|
0.973
|
— | — |
0.000
|
— | — |
0.106
|
0.943
|
0.006
|
0.155
|
0.052
|
0.058
|
0.047
|
0.039
|
0.052
|
0.015
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009270
|
1.000
|
1.000
|
Hsc_gene_19950.t1
|
Hsc_gene_19950.t1
|
— |
Q9DC61.1 Mitochondrial-processing peptidase subunit alpha [Mus musculus]
|
KAI6192023.1 Alpha-MPP [Aphelenchoides bicaudatus]
|
No
|
0.000
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — |
GO:0046872
|
GO:0005575_0.850|GO:0110165_0.846|GO:0005622_0.779|GO:0016020_0.771|GO:0005737_0.724|GO:0043226_0.720|GO:0043229_0.698|GO:0008150_0.689|GO:0043227_0.678|GO:0043231_0.663|GO:0005739_0.504
|
IPR007863+219-419+|IPR011249+49-258_299-492+|IPR011765+66-208+|IPR050361+41-484+
|
— |
PF00675+66-208+Insulinase_(Peptidase_family_M16)|PF05193+219-419+Peptidase_M16_inactive_domain
|
— |
PTHR11851+41-484+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-498
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.583
|
56017.940
|
6.192
|
-2.500
|
24.498
|
12.048
|
45.582
|
54.418
|
12.651
|
11.847
|
50.000
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
grey60
|
yellow
|
1350.386
|
1096.319
|
1353.970
|
1883.935
|
2039.938
|
1558.247
|
2290.518
|
1148.022
|
833.320
|
1018.841
|
939.332
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| — |
0.644
|
0.586
|
— |
-0.374
|
0.566
|
-0.546
|
1.139
|
— | — | — | — | — |
No JSON data available for plots.