SCN Proteipedia

Hg_chrom5_TN10mRNA_9505

Organism: Heterodera glycines Gene Locus: chr5:3526382-3530663 Feature type: polypeptide

Protein Sequence

Length: 910

Skip signal peptide

COMPOSITION	Ala	Asn	Asp	Cys	Glu	Gln	Gly	His	Ile	Leu	Lys	Met	Phe	Pro	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
ABUNDANCE	0.869	1.227	0.44	0.796	0.641	1.099	0.759	0.879	1.221	1.188	0.799	1.357	1.679	0.93	1.503	1.758	1.009	0.783	0.93	0.388	0.0

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Features

GENOMICS	Gene Name	Nested Gene	(host gene)	Average	TN7	TN8	TN10	TN20	TN22	MM26	OP50	PA3	X12
	Hg_chrom5_TN10gene_8936	—	—	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000	1.000

EFFECTORS	SCN putative	SCN known (N)	SCN known (P)	BCN known	BCN putative	Effector Islands	Cluster Name	(score)
	—	—	—	—	—	—	9-Migratory	1.000

SECRETION	Secretion	DL-signals	DL-localization	Localizer	L-nucleus	L-mitochondria	(score)	L-chloroplast	(score)	Signal Peptide	(score_v5)	(score_v6)	(TM_v5)	(TM_v6)	nucleus	mitochondrion	plastid	cytoplasm	endoplasmic_reticulum	lysosome_vacuole	golgi_apparatus	peroxisome	peroxisome	extracellular
	not_secreted	transmembrane_domain	cell_membrane	—	RHNKRKR,RQRRRRRVRRGRAKR	—	—	—	—	—	—	0.000	—	—	0.223	0.157	0.004	0.259	0.170	0.155	0.179	0.006	0.714	0.038

HOMOLOGY	Orthogroup	(SCN counts)	(BCN counts)	(BCN genes)	BCN hits	C. elegans hits	SP best hit	NR best hit	HGT Donor	HGT Index
	OG0009274	1.000	1.000	Hsc_gene_19955.t1	Hsc_gene_19955.t1	—	Q60F97.1 5-hydroxytryptamine receptor 2C [Canis lupus familiaris]	KAI1730572.1 7 transmembrane receptor (rhodopsin family) domain-containing protein [Ditylenchus destructor]	No	0.000

FUNCTIONAL	TF	GO terms	DeepGoPlus	InterPro	SMART	Pfam	FunFam	Panther
	—	GO:0004930\|GO:0007186\|GO:0016020	GO:0008150_0.970\|GO:0009987_0.920\|GO:0065007_0.864\|GO:0005575_0.857\|GO:0110165_0.857\|GO:0050789_0.849\|GO:0050794_0.829\|GO:0003674_0.810\|GO:0050896_0.779\|GO:0023052_0.737\|GO:0007154_0.736\|GO:0051716_0.730\|GO:0051179_0.728\|GO:0016020_0.721\|GO:0006810_0.689\|GO:0051234_0.689\|GO:0071944_0.670\|GO:0005886_0.664\|GO:0007165_0.655\|GO:0005622_0.643\|GO:0032501_0.638\|GO:0038023_0.593\|GO:0060089_0.593\|GO:0005488_0.587\|GO:0007186_0.576\|GO:0023051_0.558\|GO:0010646_0.557\|GO:0048519_0.546\|GO:0048518_0.526	IPR000276+72-96_81-564_87-549_105-126_155-177_161-177_190-211_234-257_491-515_531-557+\|IPR017452+87-549+	SM01381+81-564+	PF00001+87-549+7_transmembrane_receptor_(rhodopsin_family)	—	PTHR24247+70-569+

SEQUENCE	Protein Sequence
	—

STRUCTURE	Disorder	(regions)	Ordered	(regions)	PDB	(hit type)
	regions	296-424;675-910	2.000	1-295;425-674	9bsb_R	PARTIAL_DOMAIN

BIOPHYSICS	Inclusion Body	Mol weight	pI	Net Charge	Charged	Aromatic	Polar	Non-polar	Basic	Acidic	Small
	0.854	100576.490	10.823	66.000	20.659	10.330	48.681	51.319	14.396	6.264	52.308

EXPRESSION	Bin13	Bin38	Average	Egg	ppJ2	pJ2	J3	J4	Female	Male	Gland (J2)	Gland (J3)	Gland (J2+J3)
	cyan	blue	549.246	133.857	826.699	238.803	60.506	118.026	149.934	1149.108	128.770	1302.523	799.486

DGE	Egg vs ppJ2	Egg vs pJ2	ppJ2 vs pJ2	pJ2 vs J3	J3 vs J4	J4 vs F	J4 vs M	F vs M	G(J3 vs J2)	G(J2) vs pJ2	G(J3) vs J3	G(J2) lines	G(J3) lines
	2.399	0.698	-1.683	-2.017	0.978	—	3.191	-2.800	-3.421	—	-4.134	—	—

No JSON data available for plots.

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