Hg_chrom5_TN10mRNA_9506
Organism: Heterodera glycines Gene Locus: chr5:3531097-3533033 Feature type: polypeptideProtein Sequence
Length: 414
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.983 | 1.011 | 0.791 | 0.5 | 1.329 | 1.053 | 0.518 | 0.845 | 0.913 | 1.599 | 0.769 | 1.705 | 2.617 | 0.743 | 1.232 | 1.035 | 0.713 | 0.878 | 0.557 | 0.568 | 0.0 |
No JSON data available for plots.
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8937
|
— | — |
1.111
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
2.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
| — | — | — | — | — | — |
28-Not_Clustered
|
0.470
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
not_secreted
|
nuclear_localization_signal
|
cytoplasm|nucleus
|
— | — | — | — | — | — | — | — |
0.000
|
— | — |
0.689
|
0.170
|
0.037
|
0.521
|
0.041
|
0.044
|
0.044
|
0.036
|
0.074
|
0.109
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009275
|
1.000
|
1.000
|
Hsc_gene_19956.t1
|
Hsc_gene_19956.t1
|
— | — |
KAI1712682.1 zinc finger, c4 type (two domains) domain-containing protein [Ditylenchus destructor]
|
No
|
-0.200
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— |
GO:0008150_0.944|GO:0050896_0.786|GO:0032501_0.759|GO:0006950_0.719|GO:0003008_0.688|GO:0031667_0.682|GO:0050877_0.676|GO:0007610_0.675|GO:0042594_0.675|GO:0007611_0.670|GO:0007613_0.670|GO:0007614_0.670|GO:0050890_0.670
|
IPR000536+169-414_200-374_211-381+|IPR035500+167-413_194-411+|IPR050274+140-381+
|
SM00430+211-381+
|
PF00104+200-374+Ligand-binding_domain_of_nuclear_hormone_receptor
|
— |
PTHR24083+140-381+
|
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
| — | — |
1.000
|
1-414
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.521
|
47284.420
|
6.186
|
-1.500
|
25.121
|
13.768
|
45.169
|
54.831
|
12.802
|
12.319
|
44.203
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
black
|
grey
|
189.458
|
160.878
|
63.050
|
38.400
|
21.810
|
10.688
|
23.811
|
19.995
|
335.688
|
450.125
|
401.081
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-1.581
|
-2.204
|
-0.606
|
-0.843
|
-1.018
|
1.166
|
— | — | — |
-3.003
|
— | — | — |
No JSON data available for plots.