Hg_chrom5_TN10mRNA_9508
Organism: Heterodera glycines Gene Locus: chr5:3540615-3541193 Feature type: polypeptideProtein Sequence
Length: 116
(Signal peptide: 1-32)
| COMPOSITION | Ala | Asn | Asp | Cys | Glu | Gln | Gly | His | Ile | Leu | Lys | Met | Phe | Pro | Arg | Ser | Thr | Val | Trp | Tyr | Xaa |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABUNDANCE | 0.902 | 1.403 | 1.097 | 2.973 | 0.718 | 0.221 | 1.129 | 0.431 | 0.958 | 1.281 | 1.437 | 1.521 | 0.958 | 0.995 | 0.88 | 0.862 | 1.131 | 0.653 | 0.0 | 0.0 | 0.0 |
Composition
Features
TSV| GENOMICS | Gene Name | Nested Gene | (host gene) | Average | TN7 | TN8 | TN10 | TN20 | TN22 | MM26 | OP50 | PA3 | X12 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
Hg_chrom5_TN10gene_8939
|
— | — |
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
1.000
|
| EFFECTORS | SCN putative | SCN known (N) | SCN known (P) | BCN known | BCN putative | Effector Islands | Cluster Name | (score) |
|---|---|---|---|---|---|---|---|---|
|
Yes
|
— | — | — |
Hsc_gene_19959
|
— |
8-Eggs_J4_Males
|
0.997
|
| SECRETION | Secretion | DL-signals | DL-localization | Localizer | L-nucleus | L-mitochondria | (score) | L-chloroplast | (score) | Signal Peptide | (score_v5) | (score_v6) | (TM_v5) | (TM_v6) | nucleus | mitochondrion | plastid | cytoplasm | endoplasmic_reticulum | lysosome_vacuole | golgi_apparatus | peroxisome | peroxisome | extracellular |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
secreted
|
— |
extracellular
|
— | — | — | — | — | — |
1-32
|
0.815
|
0.998
|
0.000
|
0.000
|
0.237
|
0.259
|
0.057
|
0.206
|
0.103
|
0.011
|
0.022
|
0.010
|
0.127
|
0.974
|
| HOMOLOGY | Orthogroup | (SCN counts) | (BCN counts) | (BCN genes) | BCN hits | C. elegans hits | SP best hit | NR best hit | HGT Donor | HGT Index |
|---|---|---|---|---|---|---|---|---|---|---|
|
OG0009277
|
1.000
|
1.000
|
Hsc_gene_19959.t1
|
Hsc_gene_19959.t1
|
— | — | — |
No
|
-0.060
|
| FUNCTIONAL | TF | GO terms | DeepGoPlus | InterPro | SMART | Pfam | FunFam | Panther |
|---|---|---|---|---|---|---|---|---|
| — | — |
GO:0005575_0.911|GO:0110165_0.911|GO:0003674_0.830|GO:0005622_0.762|GO:0005576_0.753|GO:0016020_0.741|GO:0005737_0.723|GO:0043226_0.703|GO:0005615_0.701|GO:0071944_0.697|GO:0043229_0.685|GO:0043227_0.667|GO:0005886_0.665|GO:0043231_0.660|GO:0005198_0.658|GO:0005201_0.650|GO:0030312_0.650|GO:0031012_0.650|GO:0005773_0.595|GO:0031982_0.587|GO:0012505_0.584|GO:0031974_0.579|GO:0043233_0.579|GO:0070013_0.577|GO:0043230_0.564|GO:0065010_0.564|GO:0070062_0.564|GO:1903561_0.564|GO:0005794_0.551|GO:0005796_0.546|GO:0070701_0.540
|
IPR036084+41-104+
|
— | — | — | — |
| SEQUENCE | Protein Sequence |
|---|---|
| — |
| STRUCTURE | Disorder | (regions) | Ordered | (regions) | PDB | (hit type) |
|---|---|---|---|---|---|---|
|
regions
|
1-1;115-116
|
1.000
|
2-114
|
— | — |
| BIOPHYSICS | Inclusion Body | Mol weight | pI | Net Charge | Charged | Aromatic | Polar | Non-polar | Basic | Acidic | Small |
|---|---|---|---|---|---|---|---|---|---|---|---|
|
0.919
|
12312.320
|
8.167
|
4.500
|
25.000
|
4.310
|
44.828
|
55.172
|
14.655
|
10.345
|
60.345
|
| EXPRESSION | Bin13 | Bin38 | Average | Egg | ppJ2 | pJ2 | J3 | J4 | Female | Male | Gland (J2) | Gland (J3) | Gland (J2+J3) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
purple
|
turquoise
|
584.928
|
1377.914
|
119.913
|
101.203
|
153.396
|
754.791
|
356.753
|
597.077
|
55.521
|
1219.526
|
720.667
|
| DGE | Egg vs ppJ2 | Egg vs pJ2 | ppJ2 vs pJ2 | pJ2 vs J3 | J3 vs J4 | J4 vs F | J4 vs M | F vs M | G(J3 vs J2) | G(J2) vs pJ2 | G(J3) vs J3 | G(J2) lines | G(J3) lines |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
-3.754
|
-3.905
|
— |
0.568
|
2.315
|
-1.069
|
— |
-0.600
|
-4.589
|
— |
-2.714
|
— | — |